Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008734.1 Kokia drynarioides strain JFW-HI SEQ_123416, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4159
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34


Found at i:1457 original size:28 final size:28

Alignment explanation


    Indices: 1424--1477  Score: 99
    Period size: 28  Copynumber: 1.9  Consensus size: 28

       1414 AGTAACAGGT

                    *                   
       1424 ATGACCTTTGGGTTAACAGGGAGTAACC
          1 ATGACCTTCGGGTTAACAGGGAGTAACC

                                      
       1452 ATGACCTTCGGGTTAACAGGGAGTAA
          1 ATGACCTTCGGGTTAACAGGGAGTAA

       1478 TCAGATAACG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   25  1.00

ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24


Consensus pattern (28 bp):   
ATGACCTTCGGGTTAACAGGGAGTAACC
Done.