Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008739.1 Kokia drynarioides strain JFW-HI SEQ_123421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2060
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Found at i:1772 original size:209 final size:209
Alignment explanation
Indices: 1412--1822 Score: 599
Period size: 209 Copynumber: 2.0 Consensus size: 209
1402 ACGATTATCT
*
1412 AAATCAACGAAACAAAGCTCAATATGAGCAAATCGTCGAACCCCAGCTTCCTGATGAGATACTGA
1 AAATCAACGAAACAAAGCTCAATATGAGCAAATCGTCGAACCCCAGCTTCCTGATGAGACACTGA
** * ** * **
1477 GAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATATTGAGAAGTGGACCAAATTTG
66 GAAGCAGGTCGAAGCAATAAAACAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCG
* * ** * *
1542 TCTTCCTGATGAGATACAAAGAAGCGGATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGATA
131 TCTTCCTGATAAGACACAAAGAAGCGGATCAAAACAAGTGATGCAGTCATATTCCTGATGAGATA
*
1607 TTGAGAATTGGACC
196 CTGAGAATTGGACC
* * *
1621 AAATCAATGAAACCAAGCTCAA-AGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTG
1 AAATCAACGAAACAAAGCTCAATA-TGAGCAAATCGTCGAACCCCAGCTTCCTGATGAGACACTG
* * *
1685 AGAAGCAGGTTGAAGCAATAAAGCAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCC
65 AGAAGCAGGTCGAAGCAATAAAACAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAAATCC
*
1750 GTCTTCCTGATAAGACACAAAGAAGTGGATCAAAACAAGTGATGCAGTCATATTCCTGATGAGAT
130 GTCTTCCTGATAAGACACAAAGAAGCGGATCAAAACAAGTGATGCAGTCATATTCCTGATGAGAT
1815 ACTGAGAA
195 ACTGAGAA
1823 CTAGATCGAA
Statistics
Matches: 178, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
208 1 0.01
209 177 0.99
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (209 bp):
AAATCAACGAAACAAAGCTCAATATGAGCAAATCGTCGAACCCCAGCTTCCTGATGAGACACTGA
GAAGCAGGTCGAAGCAATAAAACAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCG
TCTTCCTGATAAGACACAAAGAAGCGGATCAAAACAAGTGATGCAGTCATATTCCTGATGAGATA
CTGAGAATTGGACC
Done.