Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008750.1 Kokia drynarioides strain JFW-HI SEQ_123432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37711
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Found at i:382 original size:216 final size:216
Alignment explanation
Indices: 1--3768 Score: 4183
Period size: 216 Copynumber: 17.5 Consensus size: 216
* *
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
66 CCCGAGCATGGAATG-TTCAAATAATTGTTC-AATGGAATGGATTGTCTTGAATACTTTATGGAA
66 CCCGAGCATGGAATGTTTCGAA-AATTGCTCGAA-GGAATGGATTGTCATGAATACTTTAAGGAA
* * **
129 CCAAAGTTA-AATAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTTATCCAAGAACCAAGAGA
129 CCGAAGTTATAA-AAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA
**
193 GAAACAACTCTCATATAAATAAGT
193 GAAACAACTCTCACGTAAATAAGT
* *
217 TTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAAACTGTTTAGACCAAATGATGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
** * * ** * * * **
282 TTCGAGCATGGAATGTTTGGAAAATTTCTCGGTGGAATGGATCGTCATGAATTCTTTTAGGAATT
66 CCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACC
* * ** * * *
347 GAAGTTTTAAAAGAAGTCGTAAAAGTTCATCAAGTTC-AGAAGTTCGTCCAAGAACAAAGAGCGG
131 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGA
* *
411 AACAATTCTCGCGTAAATAAGT
195 AACAACTCTCACGTAAATAAGT
**
433 TTTTAATTCAAAGA-CAAAATGTTGTTTACAAAATGACAAACTATTTTAGACCAAATGATGTAAT
1 TTTTAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGAT
* * ** * * *
497 TTCTCGAGCATGGAATG-TTCGAAAATTGCTCAAAACAATGGATTGTTATGAATATTTTACGGAA
64 TTCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAA
* * ** * * * * ** *
561 CTGAAGTTATAAAAGAACTTGTGTAAGTTT-TCCAGCCTCGGAAGTTCGTCCGAGGCCCAAGACA
129 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGA
* * *
625 TAAACAATTCTCACATAAATAAGT
193 GAAACAACTCTCACGTAAATAAGT
* * ** * *
649 TTTTAATTCAAAGACTAAAAGTTGTTTACAAAATGATAAACCGTTTAGACCAAATAATAC-ATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TT
* * * ** *
713 TCACAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCAAGAATACTTTAAGGAAC
65 TCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* * * * * *
778 TGAAGTTTTTAAAGAA-TCCATAAAAGTTTGCCAAGTTCGAAAGTTCGTCCAAGATCCAAGAGAG
130 CGAAGTTATAAAAGAACT-CGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* *
842 AAA-AATTCTCACGTAACTAAGT
194 AAACAACTCTCACGTAAATAAGT
* * * *
864 TTTTACTTCAAAGACCAAAAGTTGTTTACAAAATAACAAACCATTTAGACCAAATGATGCAATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
** ** *
929 CCCGAGCATGGAATG-TTCTGAAAATTAATCGAAGGAATGGATCATCGTGAATACTTTAAGGAAC
66 CCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* *
993 TGAAGTTATAAAAGAACTCGTAAAAG-TTGCCAAGTTC-AGAAGTTCGTCCAAGAACCAAGAGAG
130 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAG
1056 AAACAACTCTCACGTAAATAAGT
194 AAACAACTCTCACGTAAATAAGT
* *
1079 TTTTAATTCAAAGACCAACAA-TTGTTTAGAAAATGACAAACTATTTAAACCAAATGATGCGATT
1 TTTTAATTCAAAGACCAA-AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * ** * * *
1143 TCTCGAGCATGGAATG-TTCATAAAATTGCTCGAA-GATATTAATTGTCCTAAATGCTTTAAGGA
65 TCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGA-ATGGATTGTCATGAATACTTTAAGGA
* * * * * *
1206 ATCGAAGTTATAGAAGAACTTGTAAAAGTTTGTCATGTTCGAAAGTTTGTCCAAGATCCAAGAGA
128 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA
*
1271 GAAACAACTCTGACGTAGAA-AAGTT
193 GAAACAACTCTCACGTA-AATAAG-T
* * * *
1296 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGA-AAAATGATTCAATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
1360 CCCGAGCATGGAATGTTTGGGAAATAGCTCGAAGGAATGGATTGTTACGAATACTTTCAGGAA-C
66 CCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACC
* * * * * * *
1424 TACAGTTATAAAAG-A-----AACAGTTTGTCAAGTT-TAGAAGTTTGTCAAAGAACCAAGAAAA
131 GA-AGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAG
* ** *
1482 AAATAGTTCTCACATAAATAAGT
194 AAACAACTCTCACGTAAATAAGT
* * * * *
1505 TTTTAGTTCAAAGACCAAAAGTTGTTTACATAATGATAAACCATTTAGACCAAATGATGAGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * *** * * * *
1570 CCCGAGCATGAAAT-TTTTGAAATATAT-CTTGAAGGAATGTATCACCTTTAATATTTTAAGGGA
66 CCCGAGCATGGAATGTTTCGAAA-AT-TGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAA
* * * * *
1633 CCAAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGTCCAAGAACAAAGAGAG
129 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * **
1698 AAATAATTCTCGTGTAAATAAGT
194 AAACAACTCTCACGTAAATAAGT
* * *
1721 TTTTATTTCAAAGACGAAAAGTTGTTTACAAAATGAAAAACTATTTTAGACCAAATGATGCGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATT
* * * * * * * * *
1786 TCTCGAGCATGGAATGTTCCGAAAATTGCGCAAAGGAATGAATTATCCTGAATACTTTAAAGAAT
65 TCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* * * *
1851 CAAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGG
130 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
* *
1916 AACAATTCTCGCGTAAATAAGT
195 AACAACTCTCACGTAAATAAGT
* ** * *
1938 TTTTAATTCAAAGACTAATTGTTGTTTACAAAATAACAAACTATTTTAGACCAAATGATGTGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATT
* * * *
2003 TCCCAAGCATGGAATGTTT----AGTAGCTCGAAGGAATGGATTGTTATGAATACTTTAAGGAAC
65 TCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* * * * *
2064 TGAAGTTATAAAAGAACTCGTAGAAGTTTGCCAAGTTCGAAAGTTCGTCCAAGATCCAAGAAAGA
130 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
* *
2129 AACAATTCTCATGTAAATAAGT
195 AACAACTCTCACGTAAATAAGT
* *
2151 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAAC-ATTTAGACCAAATAATGTGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACCAAATGATGCGATT
* * * * *
2215 TCCCAAG--T-CAA-------AAAATTACTCGAAGGAATGGATCGTCAAT-AATACTATAAGGAA
65 TCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTC-ATGAATACTTTAAGGAA
* * * * * * * * *
2269 CTGAAGTTTTAAAACAAATCATAAAAGTTTGTCAAGTTCGGAAGTTCGTCCGAGATCCTAGAGAG
129 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * *
2334 AAACAATTCTCACATAAATATGT
194 AAACAACTCTCACGTAAATAAGT
* *
2357 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAACCATTTAGACCAAATGATGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * ** *
2422 GCCGAGCATGGAATGTTTAGAAAATTACTCGAAGGAATGGATCGTCATTTATACTTTAAGGAACT
66 CCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACC
** * *
2487 GAAGTTATAAAAGAACTCGTAAAAGTTTACCAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAT
131 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA
2552 ACAACTCTCACGTAAATAAGT
196 ACAACTCTCACGTAAATAAGT
* * *
2573 TTTTAATTCAAAGACCAAAAGTTGTTTAGACAATGACAAACTATTTAGACCAAATGATGTGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
** * * * * *
2638 CTAGAGCATGGAATG-TTCAAAAAATTGCTTGAAGGAATGGATTGTCCTGAATACTATAAGGAAG
66 CCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* * * * * *
2702 CGAAGTTATAGAAGAACTCATAAAAGTTTGTCATGTTCGAAAGTTTGTCCAAGATCCAAGACAGA
130 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
2767 AACAACTCTCACGTAAATAAGT
195 AACAACTCTCACGTAAATAAGT
* * * ** *
2789 TTTTAATTTAAAGACCAAAAGTTGGTTAGAAAATGACAAACTA-TTAGAAAAAATGATGCAATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* *
2853 CCCGAGCATGGAATG-TTCGGAAAATTGCTCGAAGGAATGGATTATCCTGAATACTTTAAGGAAC
66 CCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* * * * *
2917 CGAAGTTATAGAAGAACTCGTAAAAGTTTATCAAGTTCAAAAGTTCATCCAAGAATCAAGAGAGA
130 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
2982 AACAACTCTCACGTAAATAAGT
195 AACAACTCTCACGTAAATAAGT
* * * **
3004 TTTTAATTCAAAGATCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGTAATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
3069 CCCGAGCATGGAATG-TTCAAATAATCGCT-TAATGGAATGGATTGTCCTGGATACTTTATGGAA
66 CCCGAGCATGGAATGTTTCGAA-AATTGCTCGAA-GGAATGGATTGTCATGAATACTTTAAGGAA
* * ** * *
3132 TCGAAGTTATAGAAGAACTTATAAAAGTTTGTCAAGTTCGAAAGTTCATCCAAGAAACAAGAGAG
129 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
*
3197 AAACAACTCTCATGTAAATAAGT
194 AAACAACTCTCACGTAAATAAGT
* * *
3220 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTGAGACCAAATGGTGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * *
3285 CCTGAGCATGGAATG-TTCAAATAATTGCTCAAAGGAATGGATTGTCCTGAATACTTTATGGAAC
66 CCCGAGCATGGAATGTTTCGAA-AATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* * *
3349 CGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTC-AGAAGTTCATCCAAGAACCAAGAGAG
130 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAG
3413 AAACAACTCTCACGTAAATAAGT
194 AAACAACTCTCACGTAAATAAGT
* * *
3436 TTTTAATTCAAAGATCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * *
3501 CCCGAGCATGGAATG-TTCAAATAATCGCT-TAATGGAATGGATTGTCTTGAATACTTTATGG-A
66 CCCGAGCATGGAATGTTTCGAA-AATTGCTCGAA-GGAATGGATTGTCATGAATACTTTAAGGAA
* ** * * *
3563 CCGAAGTTATAGAAGAACTTATAAAAGTTTGTCAAGTTCGGAAGTTCATCCAAGAAACAAGAGAG
129 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
3628 AAACAACTCTCACGTAAATACA-T
194 AAACAACTCTCACGTAAATA-AGT
* * *
3651 TTTTAATTCAAAAACCGAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
3716 CTCGAGCATGGAATGTTT-GAAAAATTGCTTGAAGAAATGGATCGTCATGAATA
66 CCCGAGCATGGAATGTTTCG-AAAATTGCTCGAAGGAATGGATTGTCATGAATA
3769 ATTTCGGAAG
Statistics
Matches: 3046, Mismatches: 434, Indels: 145
0.84 0.12 0.04
Matches are distributed among these distances:
205 4 0.00
206 168 0.06
207 2 0.00
208 1 0.00
209 58 0.02
210 109 0.04
211 3 0.00
212 27 0.01
213 143 0.05
214 46 0.02
215 717 0.24
216 1443 0.47
217 319 0.10
218 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (216 bp):
TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
CCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACC
GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA
ACAACTCTCACGTAAATAAGT
Found at i:1318 original size:647 final size:647
Alignment explanation
Indices: 1--3768 Score: 4270
Period size: 647 Copynumber: 5.8 Consensus size: 647
* *
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATTC-ATTT
* * *
66 CCCGAGCATGGAATG-TTCAAATAATTGTTC-AATGGAATGGATTGTCTTGAATACTTTATGGAA
65 CCCGAGCATGGAATGTTTCAAA-AATTGCTCGAA-GGAATGGATTGTCATGAATACTTTAAGGAA
** * * **
129 CCAAAGTTAAATAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTTATCCAAGAACCAAGAGAG
128 CTGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
** * *
194 AAACAACTCTCATATAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAAACT
193 AAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACC
* * ** ** **
259 GTTTAGACCAAATGATGCGATTTTTCGAGCATGGAATGTT-TGGAAAATTTCTCGGTGGAATGGA
258 ATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCT-GAAAATTAATCGAAGGAATGGA
* * * ** * * **
323 TCGTCATGAATTCTTTTAGGAATTGAAGTTTTAAAAGAAGTCGTAAAAGTTCATCAAGTTCAGAA
322 TCATCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAA
* * * * *
388 GTTCGTCCAAGAACAAAGAGCGGAACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGA-CAAAA
387 GTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
**
452 TGTTGTTTACAAAATGACAAACTATTTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTC
452 -GTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* ** ** * * *
517 -GAAAATTGCTCAAAACAATGGATTGTTATGAATATTTTACGGAA-CTGAAGTTATAAAAGAACT
515 AGAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAATC-GAAGTTATAGAAGAACT
** * * * * ** * * * *
580 TGTGTAAGTTT-TCCAGCCTCGGAAGTTCGTCCGAGGCCCAAGACATAAACAATTCTCACATAAA
579 TGTAAAAGTTTGTCAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAA
644 TAAGT
643 TAAGT
* * * ** * *
649 TTTTAATTCAAAGACTAAAAGTTGTTTACAAAATGATAAACCGTTTAGACCAAATAATACATTTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATTCA-TTT
* * ** ** *
714 CACAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCAAGAATACTTTAAGGAACT
65 CCCGAGCATGGAATGTTTCAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACT
* * *
779 GAAGTTTTTA-AAGAA-TCCATAAAAGTTTGCCAAGTTCGAAAGTTCGTCCAAGATCCAAGAGAG
130 GAAG-TTATAGAAGAACT-CATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * * *
842 AAA-AATTCTCACGTAACTAAGTTTTTACTTCAAAGACCAAAAGTTGTTTACAAAATAACAAACC
193 AAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACC
906 ATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCTGAAAATTAATCGAAGGAATGGAT
258 ATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCTGAAAATTAATCGAAGGAATGGAT
* * *
971 CATCGTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTGCCAAGTTCAGAAG
323 CATCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAG
1035 TTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAACAA
388 TTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA-AA
* * *
1100 -TTGTTTAGAAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAT
452 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
** * *
1164 AAAATTGCTCGAA-GATATTAATTGTCCTAAATGCTTTAAGGAATCGAAGTTATAGAAGAACTTG
517 AAAATTGCTCGAAGGA-ATGGATTGTCCTGAATACTTTAAGGAATCGAAGTTATAGAAGAACTTG
* * * *
1228 TAAAAGTTTGTCATGTTCGAAAGTTTGTCCAAGATCCAAGAGAGAAACAACTCTGACGTAGAA-A
581 TAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTA-AATA
1292 AGTT
645 AG-T
*
1296 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGA-AAAATGATTCAATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATTC-ATTT
*** * * * *
1360 CCCGAGCATGGAATGTTTGGGAAATAGCTCGAAGGAATGGATTGTTACGAATACTTTCAGGAACT
65 CCCGAGCATGGAATGTTTCAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACT
* * * * * * *
1425 -ACAGTTAT--AA-AA--GA-AACAGTTTGTCAAGTT-TAGAAGTTTGTCAAAGAACCAAGAAAA
130 GA-AGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAG
* ** * * * *
1482 AAATAGTTCTCACATAAATAAGTTTTTAGTTCAAAGACCAAAAGTTGTTTACATAATGATAAACC
193 AAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACC
* *
1547 ATTTAGACCAAATGATG-AGATTTCCCGAGCATGAAAT-TTTTG-AAA-TATATCTTGAAGGAAT
258 ATTTAGACCAAATGATGCA-ATTTCCCGAGCATGGAATGTTCTGAAAATTA-ATC--GAAGGAAT
* * * * * * * * *
1608 GTATCACCTTTAATATTTTAAGGGACCAAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTT-T
319 GGATCATCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCA
* * * * ** * *
1672 GAAAGTTTGTCCAAGAACAAAGAGAGAAATAATTCTCGTGTAAATAAGTTTTTATTTCAAAGACG
384 G-AAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACC
*
1737 AAAAGTTGTTTACAAAATGAAAAACTATTTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
448 AAAAGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
* * * * * * *
1802 TTCCGAAAATTGCGCAAAGGAATGAATTATCCTGAATACTTTAAAGAATCAAAGTTATAGAAGAA
512 TTCAGAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAATCGAAGTTATAGAAGAA
* * * * *
1867 CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGGAACAATTCTCGCGTAA
577 CTTGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAA
1932 ATAAGT
642 ATAAGT
* ** * * *
1938 TTTTAATTCAAAGACTAATTGTTGTTTACAAAATAACAAACTATTTTAGACCAAATGATGTGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTA-TTTAGACCAAATGAT-TCATT
* * * *
2003 TCCCAAGCATGGAATGTTT----AGTAGCTCGAAGGAATGGATTGTTATGAATACTTTAAGGAAC
64 TCCCGAGCATGGAATGTTTCAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* * * * * *
2064 TGAAGTTATAAAAGAACTCGTAGAAGTTTGCCAAGTTCGAAAGTTCGTCCAAGATCCAAGAAAGA
129 TGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
* * *
2129 AACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAACA
194 AACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCA
* ** ** *
2194 TTTAGACCAAATAATGTGATTT-CC---C----AA-G-TCAAAAAATTACTCGAAGGAATGGATC
259 TTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCTGAAAATTAATCGAAGGAATGGATC
* * * * * * * *
2249 GTCAAT-AATACTATAAGGAACTGAAGTTTTAAAACAAATCATAAAAGTTTGTCAAGTTCGGAAG
324 ATC-ATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAG
* * * * * *
2313 TTCGTCCGAGATCCTAGAGAGAAACAATTCTCACATAAATATGTTTTTAATTCAAAGACCAAAAG
388 TTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
2378 TTGTTTACAAAATAACAAACCATTTAGACCAAATGATGCGATTTGC-CGAGCATGGAATGTTTAG
453 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CTCGAGCATGGAATGTTCAG
* * * ** * *
2442 AAAATTACTCGAAGGAATGGATCGTCATTTATACTTTAAGGAA-CTGAAGTTATAAAAGAACTCG
517 AAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAATC-GAAGTTATAGAAGAACTTG
** * *
2506 TAAAAGTTTACCAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGATACAACTCTCACGTAAATAA
581 TAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
2571 GT
646 GT
* *
2573 TTTTAATTCAAAGACCAAAAGTTGTTTAGACAATGACAAACTATTTAGACCAAATGATGTGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGAT-TCATTT
** * * *
2638 CTAGAGCATGGAATG-TTCAAAAAATTGCTTGAAGGAATGGATTGTCCTGAATACTATAAGGAAG
65 CCCGAGCATGGAATGTTTC-AAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAA-
* * * *
2702 C-GAAGTTATAGAAGAACTCATAAAAGTTTGTCATGTTCGAAAGTTTGTCCAAGATCCAAGACAG
128 CTGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * * *
2766 AAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGGTTAGAAAATGACAAACT
193 AAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACC
** * **
2831 A-TTAGAAAAAATGATGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGAT
258 ATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCTGAAAATTAATCGAAGGAATGGAT
* * * * *
2895 TATCCTGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTATCAAGTTCAAAAG
323 CATCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAG
* * *
2960 TTCATCCAAGAATCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAAG
388 TTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * ** *
3025 TTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGTAATTTCCCGAGCATGGAATGTTCA-A
453 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* * * * *
3089 ATAATCGCT-TAATGGAATGGATTGTCCTGGATACTTTATGGAATCGAAGTTATAGAAGAACTTA
518 A-AATTGCTCGAA-GGAATGGATTGTCCTGAATACTTTAAGGAATCGAAGTTATAGAAGAACTTG
* * *
3153 TAAAAGTTTGTCAAGTTCGAAAGTTCATCCAAGAAACAAGAGAGAAACAACTCTCATGTAAATAA
581 TAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
3218 GT
646 GT
* * *
3220 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTGAGACCAAATGGTGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATTC-ATTT
* * * *
3285 CCTGAGCATGGAATG-TTCAAATAATTGCTCAAAGGAATGGATTGTCCTGAATACTTTATGGAAC
65 CCCGAGCATGGAATGTTTCAAA-AATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* *
3349 CGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTC-AGAAGTTCATCCAAGAACCAAGAGAG
129 TGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAG
* * *
3413 AAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAAGTTGTTTAGAAAATGACAAACT
193 AAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACC
* *
3478 ATTTAGACCAAATGGTGCGATTTCCCGAGCATGGAATGTTC---AAA-TAATCGCTTAATGGAAT
258 ATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCTGAAAATTAATCG---AA-GGAAT
** * * * ** *
3539 GGATTGTCTTGAATACTTTATGG-ACCGAAGTTATAGAAGAACTTATAAAAGTTTGTCAAGTTCG
319 GGATCATCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCA
* * *
3603 GAAGTTCATCCAAGAAACAAGAGAGAAACAACTCTCACGTAAATACA-TTTTTAATTCAAAAACC
384 GAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA-AGTTTTTAATTCAAAGACC
* *
3667 GAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGT
448 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * * * *
3732 T-TGAAAAATTGCTTGAAGAAATGGATCGTCATGAATA
513 TCAG-AAAATTGCTCGAAGGAATGGATTGTCCTGAATA
3769 ATTTCGGAAG
Statistics
Matches: 2655, Mismatches: 384, Indels: 163
0.83 0.12 0.05
Matches are distributed among these distances:
633 2 0.00
634 35 0.01
635 184 0.07
636 131 0.05
637 19 0.01
638 161 0.06
639 10 0.00
640 87 0.03
641 145 0.05
642 130 0.05
643 156 0.06
644 36 0.01
645 50 0.02
646 370 0.14
647 907 0.34
648 223 0.08
649 9 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (647 bp):
TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATTCATTTC
CCGAGCATGGAATGTTTCAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTG
AAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAA
CAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCATT
TAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCTGAAAATTAATCGAAGGAATGGATCAT
CATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTC
GTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAA
TTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAATCGAAGTTATAGAAGAACTTGTAAAA
GTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
Found at i:2946 original size:431 final size:431
Alignment explanation
Indices: 1--3768 Score: 4284
Period size: 431 Copynumber: 8.8 Consensus size: 431
* *
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGATTT
* * * *
66 CCCGAGCATGGAATGTTCAAATAATTGTTC-AATGGAATGGATTGTCTTGAATACTTTATGGAAC
66 CCCGAGCATGGAATGTTCAAAAAATTGCTCGAA-GGAATGGATTGTCCTGAATACTTTAAGGAA-
* * * **
130 CAAAGTTAAATAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTTATCCAAGAACCAAGAGAGA
129 CGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
** * *
195 AACAACTCTCATATAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAAACTG
194 AACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
** * **
260 TTTAGACCAAATGATGCGATTTTTCGAGCATGGAATGTTTGGAAAATTTCTCGGTGGAATGGATC
259 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATC
* * ** * * * **
325 GTCATGAATTCTTTTAGGAATTGAAGTTTTAAAAGAAGTCGTAAAAGTTCATCAAGTTC-AGAAG
324 GTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAG
* * * * *
389 TTCGTCCAAGAACAAAGAGCGGAACAATTCTCGCGTAAATAAGT
388 TTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* *
433 TTTTAATTCAAAGA-CAAAATGTTGTTTACAAAATGACAAACTATTTTAGACCAAATGATGTAAT
1 TTTTAATTCAAAGACCAAAA-GTTGTTTAGAAAATGACAAACTA-TTTAGACCAAATGATGTGAT
* * * ** ** * *
497 TTCTCGAGCATGGAATGTTC-GAAAATTGCTCAAAACAATGGATTGTTATGAATATTTTACGGAA
64 TTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAA
* ** ** * * * * ** *
561 CTGAAGTTATAAAAGAACTTGTGTAAGTTT-TCCAGCCTCGGAAGTTCGTCCGAGGCCCAAGACA
129 C-GAAGTTATAGAAGAACTCATAAAAGTTTGTCAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGA
* * * * *
625 TAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAATGATAAAC
192 GAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
** * * * *
690 CGTTTAGACCAAATAATAC-ATTTTCACAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGG
257 TATTTAGACCAAATGATGCGA-TTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGG
* * * * * *
754 ATCATCAAGAATACTTTAAGGAACTGAAGTTTTTA-AAGAA-TCCATAAAAGTTTGCCAAGTTCG
321 ATCGTCATGAATACTTTAAGGAACCGAAG-TTATAGAAGAACT-CGTAAAAGTTTGTCAAGTTCG
* * *
817 AAAGTTCGTCCAAGATCCAAGAGAGAAA-AATTCTCACGTAACTAAGT
384 AAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* * * * **
864 TTTTACTTCAAAGACCAAAAGTTGTTTACAAAATAACAAACCATTTAGACCAAATGATGCAATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGATTT
** ** ** *
929 CCCGAGCATGGAATGTTCTGAAAATTAATCGAAGGAATGGATCATCGTGAATACTTTAAGGAACT
66 CCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAAC-
* * *
994 GAAGTTATAAAAGAACTCGTAAAAG-TTGCCAAGTTC-AGAAGTTCGTCCAAGAACCAAGAGAGA
130 GAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGA
*
1057 AACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAACAA-TTGTTTAGAAAATGACAAACT
194 AACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA-AAGTTGTTTACAAAATGACAAACT
* * *** **
1121 ATTTAAACCAAATGATGCGATTTCTCGAGCATGGAATGTTCATAAAATTGCTCGAA-GATATTAA
258 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGA-ATGGA
* * * * * * *
1185 TTGTCCTAAATGCTTTAAGGAATCGAAGTTATAGAAGAACTTGTAAAAGTTTGTCATGTTCGAAA
322 TCGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGAAA
* * *
1250 GTTTGTCCAAGATCCAAGAGAGAAACAACTCTGACGTAGAA-AAGTT
387 GTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTA-AATAAG-T
* *
1296 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGA-AAAATGAT-TCAATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGT-GATT
**** * * *
1359 TCCCGAGCATGGAATGTTTGGGAAATAGCTCGAAGGAATGGATTGTTAC-GAATACTTTCAGGAA
65 TCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTG-TCCTGAATACTTTAAGGAA
* * * * * * *
1423 CTACAGTTAT--AA-AA--GA-AACAGTTTGTCAAGTT-TAGAAGTTTGTCAAAGAACCAAGAAA
129 CGA-AGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGA
* * ** * * * *
1481 AAAATAGTTCTCACATAAATAAGTTTTTAGTTCAAAGACCAAAAGTTGTTTACATAATGATAAAC
192 GAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * * * *
1546 CATTTAGACCAAATGATGAGATTTCCCGAGCATGAAAT-TTTTGAAATATAT-CTTGAAGGAATG
257 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAA-AT-TGCTCGAAGGAATG
* ** * * * * * *
1609 TATCACCTTTAATATTTTAAGGGACCAAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTTGA
320 GATCGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGA
* * * * **
1674 AAGTTTGTCCAAGAACAAAGAGAGAAATAATTCTCGTGTAAATAAGT
385 AAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* * * * *
1721 TTTTATTTCAAAGACGAAAAGTTGTTTACAAAATGAAAAACTATTTTAGACCAAATGATGCGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTA-TTTAGACCAAATGATGTGATT
* ** * * * * *
1786 TCTCGAGCATGGAATGTTCCGAAAATTGCGCAAAGGAATGAATTATCCTGAATACTTTAAAGAAT
65 TCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAA-
* * * *
1851 CAAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGG
129 CGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
* * * ** *
1916 AACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGACTAATTGTTGTTTACAAAATAACAAACTA
194 AACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * *
1981 TTTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTT----AGTAGCTCGAAGGAATGGAT
259 -TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGAT
* * * * * *
2042 TGTTATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAGAAGTTTGCCAAGTTCGAAAG
323 CGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAG
* * * *
2107 TTCGTCCAAGATCCAAGAAAGAAACAATTCTCATGTAAATAAGT
388 TTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* *
2151 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAAC-ATTTAGACCAAATAATGTGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAC-AAACTATTTAGACCAAATGATGTGATT
* * * *
2215 T-CC---C----AA-G-TCAAAAAATTACTCGAAGGAATGGATCGTCAAT-AATACTATAAGGAA
65 TCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTC-CTGAATACTTTAAGGAA
* * * * * * * *
2269 CTGAAGTTTTAAAACAAATCATAAAAGTTTGTCAAGTTCGGAAGTTCGTCCGAGATCCTAGAGAG
129 C-GAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * * * *
2334 AAACAATTCTCACATAAATATGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAACC
193 AAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * *
2399 ATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATGTTTAGAAAATTACTCGAAGGAATGGAT
258 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGAT
** * * ** *
2464 CGTCATTTATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTACCAAGTTCGGAAG
323 CGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAG
*
2529 TTCGTCCAAGAACCAAGAGAGATACAACTCTCACGTAAATAAGT
388 TTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
*
2573 TTTTAATTCAAAGACCAAAAGTTGTTTAGACAATGACAAACTATTTAGACCAAATGATGTGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGATTT
** * *
2638 CTAGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCCTGAATACTATAAGGAAGC
66 CCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAA-C
* * * *
2703 GAAGTTATAGAAGAACTCATAAAAGTTTGTCATGTTCGAAAGTTTGTCCAAGATCCAAGACAGAA
130 GAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA
* * *
2768 ACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGGTTAGAAAATGACAAACTA-
195 ACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
** * * **
2832 TTAGAAAAAATGATGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATTA
260 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCG
* * *
2897 TCCTGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTATCAAGTTCAAAAGTT
325 TCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTT
* *
2962 CATCCAAGAATCAAGAGAGAAACAACTCTCACGTAAATAAGT
390 CGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* * *
3004 TTTTAATTCAAAGATCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGTAATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGATTT
* * * * *
3069 CCCGAGCATGGAATGTTCAAATAATCGCT-TAATGGAATGGATTGTCCTGGATACTTTATGGAAT
66 CCCGAGCATGGAATGTTCAAAAAATTGCTCGAA-GGAATGGATTGTCCTGAATACTTTAAGGAA-
* * *
3133 CGAAGTTATAGAAGAACTTATAAAAGTTTGTCAAGTTCGAAAGTTCATCCAAGAAACAAGAGAGA
129 CGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
* *
3198 AACAACTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTA
194 AACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * ** *
3263 TTGAGACCAAATGGTGCGATTTCCTGAGCATGGAATG-TTCAAATAATTGCTCAAAGGAATGGAT
259 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAA-AATTGCTCGAAGGAATGGAT
* * * *
3327 TGTCCTGAATACTTTATGGAACCGAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTC-AGAA
323 CGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AA
*
3391 GTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
387 GTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* * *
3436 TTTTAATTCAAAGATCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGGTGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGATTT
* * * * * *
3501 CCCGAGCATGGAATGTTCAAATAATCGCT-TAATGGAATGGATTGTCTTGAATACTTTATGGACC
66 CCCGAGCATGGAATGTTCAAAAAATTGCTCGAA-GGAATGGATTGTCCTGAATACTTTAAGGAAC
* * * *
3565 GAAGTTATAGAAGAACTTATAAAAGTTTGTCAAGTTCGGAAGTTCATCCAAGAAACAAGAGAGAA
130 GAAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA
* *
3630 ACAACTCTCACGTAAATACA-TTTTTAATTCAAAAACCGAAAGTTGTTTACAAAATGACAAACTA
195 ACAACTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * *
3694 TTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTTGAAGAAATGGATC
259 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATC
3759 GTCATGAATA
324 GTCATGAATA
3769 ATTTCGGAAG
Statistics
Matches: 2848, Mismatches: 416, Indels: 145
0.84 0.12 0.04
Matches are distributed among these distances:
418 38 0.01
419 144 0.05
420 2 0.00
421 6 0.00
422 171 0.06
425 54 0.02
426 222 0.08
427 68 0.02
428 5 0.00
429 30 0.01
430 379 0.13
431 786 0.28
432 774 0.27
433 132 0.05
434 34 0.01
435 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (431 bp):
TTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGATTT
CCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAGGAACG
AAGTTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAA
CAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGT
CATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC
GTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
Found at i:3896 original size:172 final size:172
Alignment explanation
Indices: 3599--3940 Score: 458
Period size: 172 Copynumber: 2.0 Consensus size: 172
3589 GTTTGTCAAG
*
3599 TTCGGAAGTTCATCCAAGAAACAAGAGAGAAACAACTCTCACGTAAATACATTTTTAATTCAAAA
1 TTCGGAAGTTCATCCAAGAAACAAGAGAGAAACAACTCTCACATAAATACATTTTTAATTCAAAA
* ** *
3664 ACCGAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAA
66 ACCGAAAGTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGAAATTTCCCGAGCATGGAA
* * *
3729 TGTTTGAAAAATTGCTTGAAGAAATGGATCGTCATGAATAAT
131 TGTTCGAAAAATTGCTCGAAGAAATGAATCGTCATGAATAAT
* * * * *
3771 TTCGGAAGTTCGTCGAAGAAGA-AAGATAGGAACAATTCTCACATAAATA-ACTTTTTAATTCAA
1 TTCGGAAGTTCATCCAAGAA-ACAAGAGAGAAACAACTCTCACATAAATACA-TTTTTAATTCAA
*
3834 AGACC-AAATGTTGTTTACAAAATGACAAACTATTTTA-AACAAATGATGAAATTTCCCGAGCAT
64 AAACCGAAA-GTTGTTTACAAAATGACAAACTA-TTTAGAACAAATGATGAAATTTCCCGAGCAT
* * * *
3897 GGAATGTTCGGAAAATTGCTCGAAGGAATGAATTGTTATGAATA
127 GGAATGTTCGAAAAATTGCTCGAAGAAATGAATCGTCATGAATA
3941 CTTTATGAAA
Statistics
Matches: 148, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
171 4 0.03
172 139 0.94
173 5 0.03
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (172 bp):
TTCGGAAGTTCATCCAAGAAACAAGAGAGAAACAACTCTCACATAAATACATTTTTAATTCAAAA
ACCGAAAGTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGAAATTTCCCGAGCATGGAA
TGTTCGAAAAATTGCTCGAAGAAATGAATCGTCATGAATAAT
Found at i:4349 original size:216 final size:215
Alignment explanation
Indices: 3801--4847 Score: 1230
Period size: 216 Copynumber: 4.9 Consensus size: 215
3791 GAAAGATAGG
* *
3801 AACAATTCTCACATAAATAACTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTA
1 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA-GTTGTTTACAAAATGACAAACTA
* ** *
3866 TTTTA-AACAAATGATGAAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGAAT
65 -TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAAT
* * * * ** *
3930 TGTTATGAATACTTTATGAAACTGAAGTTATAAAAGAACTCGTGTAAG-TTGTCCATGTTCGGAA
129 TGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGT-CAAGTTCGGAA
* * *
3994 GTTCGTCCAAGA-CCCA-TGAGA
193 GTTCATCCAAGATCCAAGAGAGA
* * * *
4015 AACAATTCTCACGTAAATAAATTTTTAATTC---TA--AAAGTTGTTTACAAAATGATAAACCAT
1 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAACTAT
* * * * **
4075 TTAGACCAAATAATGCGATTTCCCAAGCATGGAATGTTCGAAAAGTTGCTCGAAGGAATGCATCA
66 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATTG
* * * *
4140 TCAAGAATACTTTAAGGAACTGAAGTTTTTAAAGAACCCATAAAAGTTTGTCAAGTTCGGAAGTT
131 TCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTT
4205 CATCCAAGATCCAAGAGAGA
196 CATCCAAGATCCAAGAGAGA
* *
4225 AACAATTCTCATGTAAATAAGTTTTTACTTCAAAGACCGAAAGTTGTTTACAAAATGACAAACTA
1 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTA
* * ** * * *
4290 TTAAGGCCAAATGATGCGATTTTTCGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATT
65 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATT
* * * * * *
4355 GTCCTGAATACTATAAGGAACCGAAGTTATAGAAGAACTCGTAAAAAGTTTGTCATGTTCGGAAG
130 GTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGT-AAAAGTTTGTCAAGTTCGGAAG
* * *
4420 TTCGTCCAAGATCCAAATACAGA
194 TTCATCCAAGATCC-AAGAGAGA
* * *
4443 AACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTAGAAAATGACAAACTA
1 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTA
** * * * * * *
4508 TTTAGAAAAAATGATGCGATTTCTCAAGCATGAAATGTTCGAAAAATAGCTCGAACGAATGAATC
65 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATT
* *
4573 GTCATGAATAATTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAGT
130 GTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGT
* * *
4638 TCATCTAAGAACAAAGAGAGA
195 TCATCCAAGATCCAAGAGAGA
* * * *
4659 AACAATTCTCGCATAATTAAGTTTTTAATTCAAGGACCAAAAGTTGTTTACAAAATGACAAACTA
1 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTA
* *
4724 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAATGAATGGATT
65 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATT
* * * * ** * ** **
4789 ATTATGAATAATTAAAGGAACTGAAGTCATAAAAAAACAAGTAAAAGTTTAACAAGTTC
130 GTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTC
4848 TGGAGTTTGT
Statistics
Matches: 701, Mismatches: 120, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
207 4 0.01
208 129 0.18
209 10 0.01
210 32 0.05
211 1 0.00
213 1 0.00
214 29 0.04
216 278 0.40
217 64 0.09
218 153 0.22
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAACTAT
TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATTG
TCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTT
CATCCAAGATCCAAGAGAGA
Found at i:4657 original size:434 final size:422
Alignment explanation
Indices: 3771--4798 Score: 1331
Period size: 434 Copynumber: 2.4 Consensus size: 422
3761 CATGAATAAT
* * * * * *
3771 TTCGGAAGTTCGTCGAAGAAGAAAGATAGGAACAATTCTCACATAAATAACTTTTTAATTCAAAG
1 TTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* **
3836 ACCAAATGTTGTTTACAAAATGACAAACTATTTTAA-ACAAATGATGAAATTTCCCGAGCATGGA
66 ACCAAA-GTTGTTTACAAAATGACAAACTA--TTAAGCCAAATGATGCGATTTCCCGAGCATGGA
* * * * * *
3900 ATGTTCGGAAAATTGCTCGAAGGAATGAATTGTTATGAATACTTTATGAAACTGAAGTTATAAAA
128 ATGTTCGAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTATAAGAAACCGAAGTTATAAAA
** * * *
3965 GAACTCGTGTAAGTTGTCCATGTTCGGAAGTTCGTCCAAGACCCATGAGAAACAATTCTCACGTA
193 GAACTCGTAAAAGTTGTCCATGTTCGGAAGTTCGTCCAAGACCAATCAGAAACAACTCTCACGTA
* * **
4030 AATAAATTTTTAATTCTAAAAGTTGTTTACAAAATGATAAACCATTTAGACCAAATAATGCGATT
258 AATAAATTTTTAATTCCAAAAGTTGTTTACAAAATGACAAACCATTTAGAAAAAATAATGCGATT
* * * * * *
4095 TCCCAAGCATGGAATGTTCGAAAAGTTGCTCGAAGGAATGCATCATCAAGAATACTTTAAGGAAC
323 TCCCAAGCATGAAATGTTCGAAAAATAGCTCGAACGAATGAATCATCAAGAATAATTTAAGGAAC
*
4160 TGAAGTTTTTAAAGAACCCATAAAAGTTTGTCAAG
388 TGAAGTTTTAAAAGAACCCATAAAAGTTTGTCAAG
* * ** *
4195 TTCGGAAGTTCATCCAAGATCCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTACTTCAAAG
1 TTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
**
4260 ACCGAAAGTTGTTTACAAAATGACAAACTATTAAGGCCAAATGATGCGATTTTTCGAGCATGGAA
66 ACC-AAAGTTGTTTACAAAATGACAAACTATTAA-GCCAAATGATGCGATTTCCCGAGCATGGAA
* * * * *
4325 TGTTCAAAAAATTGCTCAAAGGAATGGATTGTCCTGAATACTATAAGGAACCGAAGTTATAGAAG
129 TGTTCGAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTATAAGAAACCGAAGTTATAAAAG
4390 AACTCGTAAAAAGTTTGT-CATGTTCGGAAGTTCGTCCAAGATCCAAATACAGAAACAACTCTCA
194 AACTCGT-AAAAG-TTGTCCATGTTCGGAAGTTCGTCCAAGA-CC-AAT-CAGAAACAACTCTCA
* * *
4454 CGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGAAAAAA
254 CGTAAATAAATTTTTAA-TT-----CCAAAAGTTGTTTACAAAATGACAAACCATTTAGAAAAAA
* * * *
4519 TGATGCGATTTCTCAAGCATGAAATGTTCGAAAAATAGCTCGAACGAATGAATCGTCATGAATAA
313 TAATGCGATTTCCCAAGCATGAAATGTTCGAAAAATAGCTCGAACGAATGAATCATCAAGAATAA
* *
4584 TTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAG
378 TTTAAGGAACTGAAGTTTTAAAAGAACCCATAAAAGTTTGTCAAG
* * * * *
4629 TTTGGAAGTTCATCTAAGAACAAAGAGAGAAACAATTCTCGCATAATTAAGTTTTTAATTCAAGG
1 TTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
*
4694 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
66 ACC-AAAGTTGTTTACAAAATGACAAACTATTAAG-CCAAATGATGCGATTTCCCGAGCATGGAA
* * *
4759 TGTTCGAAAAATTGCTCGAATGAATGGATTATTATGAATA
129 TGTTCGAAAAATTGCTCGAAGGAATGGATTGTCATGAATA
4799 ATTAAAGGAA
Statistics
Matches: 517, Mismatches: 72, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
422 4 0.01
424 165 0.32
425 29 0.06
426 6 0.01
427 2 0.00
428 29 0.06
429 2 0.00
433 1 0.00
434 279 0.54
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (422 bp):
TTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
ACCAAAGTTGTTTACAAAATGACAAACTATTAAGCCAAATGATGCGATTTCCCGAGCATGGAATG
TTCGAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTATAAGAAACCGAAGTTATAAAAGAA
CTCGTAAAAGTTGTCCATGTTCGGAAGTTCGTCCAAGACCAATCAGAAACAACTCTCACGTAAAT
AAATTTTTAATTCCAAAAGTTGTTTACAAAATGACAAACCATTTAGAAAAAATAATGCGATTTCC
CAAGCATGAAATGTTCGAAAAATAGCTCGAACGAATGAATCATCAAGAATAATTTAAGGAACTGA
AGTTTTAAAAGAACCCATAAAAGTTTGTCAAG
Found at i:5453 original size:80 final size:80
Alignment explanation
Indices: 5318--5467 Score: 257
Period size: 80 Copynumber: 1.9 Consensus size: 80
5308 ACTAATTTCA
*
5318 TTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTAATGTA-CTTGAAAA
1 TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTAATGTAGC-TGAAAA
5382 GACATGGCAATTTCGT
65 GACATGGCAATTTCGT
*
5398 TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTGAAAAG
1 TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTAATGTAGCTGAAAAG
*
5463 GCATG
66 ACATG
5468 ACATTTCTCC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
80 65 0.98
81 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (80 bp):
TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTAATGTAGCTGAAAAG
ACATGGCAATTTCGT
Found at i:5953 original size:48 final size:48
Alignment explanation
Indices: 5916--6044 Score: 188
Period size: 48 Copynumber: 2.7 Consensus size: 48
5906 CAAGACATTT
* * *
5916 AACAAAGATGCATTTAACAAACAAAATAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTATTA
* * *
5964 AACCAAGATGCATTTAACAAACAAAACACTTAATGATGTAGATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTATTA
*
6012 AACAAAGATGCATTTAACAAA-AAACCACTTAAT
1 AACAAAGATGCATTTAACAAACAAAACACTTAAT
6045 GAAGCATAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 11 0.15
48 62 0.85
ACGTcount: A:0.51, C:0.15, G:0.09, T:0.25
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTATTA
Found at i:6975 original size:216 final size:216
Alignment explanation
Indices: 6346--7015 Score: 1009
Period size: 216 Copynumber: 3.1 Consensus size: 216
6336 TGCTCACATT
* * * * *
6346 AGTTCATCCAAGAACCAAGAGAGAAATAACTCTCACGTAATTAAGTTTTTAATTCAAATACTAAA
1 AGTTCATCAAAGAACCAAAAGAGAAATAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * *
6411 AGTCGTTTAGAACATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTAA
66 AGTTGTTTAGAAAATGATAAACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTAA
* * ** *
6476 AAAAATTACTCGAAGGAGTGGATTGTCCTGAATACTTTAAAGAACCCAACTTATAGAAGAACTTG
131 AAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAAGAACAAAACTTATAGAAGAACTCG
*
6541 TAAAAGTTTGTCAAGTTCGAG
196 TAAAAGTTTGTCAAGTTCGGG
* * *
6562 TGTTCATCAAAGAACCAAAAGAGAAACAACTCTAACGTAAATAAGTTTTTAATTCAAAGACCAAA
1 AGTTCATCAAAGAACCAAAAGAGAAATAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * *
6627 AGTTGTTTAGAAAATGAT-AACTGTTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGCTCA
66 AGTTGTTTAGAAAATGATAAACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTAA
*
6691 AAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAAGAACTAAACTTATAGAAGAACTCG
131 AAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAAGAACAAAACTTATAGAAGAACTCG
6756 TAAAAGTTTGTCAAGTTCGGG
196 TAAAAGTTTGTCAAGTTCGGG
* * *
6777 AGTTCGTCAAAGAACCAAAAGAGAAATAACTCTCATGTAAATAAGTTTTTAACTCAAAGACCAAA
1 AGTTCATCAAAGAACCAAAAGAGAAATAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
** *
6842 AGTTGTTTAGAAAATGATAAACTATTTAGACTAAATGATGCGATTTCTAGAGCATGGAATGTTTA
66 AGTTGTTTAGAAAATGATAAACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTAA
* * * *
6907 AAAAATTGCTCAAAGGAATGGATTGTCCTGAATAATTTAATGAACAAAAGTTATAGAAGAACTCG
131 AAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAAGAACAAAACTTATAGAAGAACTCG
*
6972 TAAAAGTTTGTCAAGTTCGGC
196 TAAAAGTTTGTCAAGTTCGGG
* *
6993 AGTTCATCCAAGAACCAAGAGAG
1 AGTTCATCAAAGAACCAAAAGAG
7016 TTGTTTACAA
Statistics
Matches: 411, Mismatches: 42, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
215 198 0.48
216 213 0.52
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (216 bp):
AGTTCATCAAAGAACCAAAAGAGAAATAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
AGTTGTTTAGAAAATGATAAACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTAA
AAAAATTGCTCGAAGGAATGGATTGTCCTGAATACTTTAAAGAACAAAACTTATAGAAGAACTCG
TAAAAGTTTGTCAAGTTCGGG
Found at i:7138 original size:167 final size:167
Alignment explanation
Indices: 6874--7180 Score: 402
Period size: 167 Copynumber: 1.8 Consensus size: 167
6864 TATTTAGACT
* * ** *
6874 AAATGATGCGATTTCTAGAGCATGGAATGTTTAAAAAATTGCTCAAAGGAATGGATTGTCCTGAA
1 AAATGATGCGATTTCCAGAGCATGGAATGTCTAAAAAATTAATCAAAGGAATGGATCGTCCTGAA
* * * * * *
6939 TAATTTAATGAACAAAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGCAGTTCATCCAA
66 TAATTTAAGGAACAAAAGTTACAGAAGAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCATCCAA
7004 GAACCAAGAGAGTTGTTTACAAAATGACAAACCAAAC
131 GAACCAAGAGAGTTGTTTACAAAATGACAAACCAAAC
* * * *
7041 AAATGATGCGATTTCCCGAGCATGGAATGCTCT-GAAAATTAATCGAAGGAATGGATCGTCTTGA
1 AAATGATGCGATTTCCAGAGCATGGAATG-TCTAAAAAATTAATCAAAGGAATGGATCGTCCTGA
* ** *
7105 ATACTTTAAGGAACTGAAGTTACA-AATGAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCGTCC
65 ATAATTTAAGGAACAAAAGTTACAGAA-GAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCATCC
*
7169 GAGAACCAAGAG
129 AAGAACCAAGAG
7181 CGAAACAACT
Statistics
Matches: 118, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
166 2 0.02
167 114 0.97
168 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.25
Consensus pattern (167 bp):
AAATGATGCGATTTCCAGAGCATGGAATGTCTAAAAAATTAATCAAAGGAATGGATCGTCCTGAA
TAATTTAAGGAACAAAAGTTACAGAAGAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCATCCAA
GAACCAAGAGAGTTGTTTACAAAATGACAAACCAAAC
Found at i:7365 original size:383 final size:383
Alignment explanation
Indices: 6658--7398 Score: 1036
Period size: 383 Copynumber: 1.9 Consensus size: 383
6648 TGTTTAGACT
** *
6658 AAATGATGCGATTTCCCGAGCATGGAATGCTCAAAAAATTGCTCGAAGGAATGGATTGTCCTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGCTCAAAAAATTAATCGAAGGAATGGATCGTCCTGAA
* * * * *
6723 TACTTTAAAGAACTAAACTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGGAGTTCGTCAAA
66 TACTTTAAAGAACTAAACTTACAGAAGAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCGTCAAA
* * * *
6788 GAACCAAAAGAGAAATAACTCTCATGTAAATAAGTTTTTAACTCAAAGACCAAAAGTTGTTTAGA
131 GAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTATAACTCAAAGACAAAAAGTTGTTTAGA
* * * * * *
6853 AAATGATAAACTATTTAGACTAAATGATGCGATTTCTAGAGCATGGAATGTTTAAAAAATTGCTC
196 AAATGACAAACTATTAAGACTAAATGATGCAATTTCTAGAGCATGGAATCTTGAAAAAATTGATC
*
6918 AAAGGAATGGATTGTCCTGAATAATTTAATGAACAAAAGTTATAGAAGAACTCGTAAAAGTTTGT
261 AAAGGAATGGATTGTCCTGAATAATTTAAGGAACAAAAGTTATAGAAGAACTCGTAAAAGTTTGT
* * *
6983 CAAGTTCGGCAGTTCATCCAAGAACCAAGAGAGTTGTTTACAAAATGACAAACCAAAC
326 CAAGTTCGGAAGTTCACCCAACAACCAAGAGAGTTGTTTACAAAATGACAAACCAAAC
** *
7041 AAATGATGCGATTTCCCGAGCATGGAATGCTCTGAAAATTAATCGAAGGAATGGATCGTCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGCTCAAAAAATTAATCGAAGGAATGGATCGTCCTGAA
* * * **
7106 TACTTTAAGGAACTGAAGTTACA-AATGAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCGTCCG
66 TACTTTAAAGAACTAAACTTACAGAA-GAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCGTCAA
* * * * *
7170 AGAACCAAGAGCGAAACAACTCTCACGTACATAAGTTTATAATTCAAAGACAAAAAGTTGTTTTG
130 AGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTATAACTCAAAGACAAAAAGTTGTTTAG
* * * *
7235 AAAATGACAAACTATTAAGATTAAATGATGTAATTTCTCGAGCATGTAATCTTGAAAAAATTGAT
195 AAAATGACAAACTATTAAGACTAAATGATGCAATTTCTAGAGCATGGAATCTTGAAAAAATTGAT
* * * * *
7300 CGAA-GAAGTGGATTGTCTTGATTACTTTAAGGAACCAAAGTTATAGAAGAACTCGTAAAAGTTT
260 CAAAGGAA-TGGATTGTCCTGAATAATTTAAGGAACAAAAGTTATAGAAGAACTCGTAAAAGTTT
* *
7364 GTGAAGTTCGGAAGTTCGCCCAACAACCAAGAGAG
324 GTCAAGTTCGGAAGTTCACCCAACAACCAAGAGAG
7399 AAACAATTCT
Statistics
Matches: 310, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
382 5 0.02
383 305 0.98
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (383 bp):
AAATGATGCGATTTCCCGAGCATGGAATGCTCAAAAAATTAATCGAAGGAATGGATCGTCCTGAA
TACTTTAAAGAACTAAACTTACAGAAGAACTCGTAAAAGTTTGCCAAGCTAGGAAGTTCGTCAAA
GAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTATAACTCAAAGACAAAAAGTTGTTTAGA
AAATGACAAACTATTAAGACTAAATGATGCAATTTCTAGAGCATGGAATCTTGAAAAAATTGATC
AAAGGAATGGATTGTCCTGAATAATTTAAGGAACAAAAGTTATAGAAGAACTCGTAAAAGTTTGT
CAAGTTCGGAAGTTCACCCAACAACCAAGAGAGTTGTTTACAAAATGACAAACCAAAC
Found at i:7422 original size:216 final size:216
Alignment explanation
Indices: 7014--11433 Score: 4537
Period size: 216 Copynumber: 20.5 Consensus size: 216
7004 GAACCAAGAG
* * *
7014 AGTTGTTTACAAAATGACAAACCA---A-A-CAAATGATGCGATTTCCCGAGCATGGAATGCTCT
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATG-TTT
* *
7074 -GAAAATTAATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTACA-AATGAACT
65 AGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAA-GAACT
* * * * * * * *
7137 CGTAAAAGTTTGCCAAGCTAGGAAGTTCGTCCGAGAACCAAGAGCGAAACAACTCTCACGTACAT
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
* *
7202 AAGTTTATAATTCAAAGACAAAA
194 AAGTTTTTAATTCAAAGACCAAA
** * ** ** * * * *
7225 AGTTGTTTTGAAAATGACAAACTATTAAGATTAAATGATGTAATTTCTCGAGCATGTAATCTTGA
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * **
7290 AAAAATTGATCGAA-GAAGTGGATTGTCTTGATTACTTTAAGGAACCAAAGTTATAGAAGAACTC
66 GAAAATTGATCGAAGGAA-TGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTC
* * *
7354 GTAAAAGTTTGTGAAGTTCGGAAGTTCGCCCAACAACCAAGAGAGAAACAATTCTCACATAAATA
130 GTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
*
7419 AGTTTTTAATTCAAACACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * * *
7441 AATTATTTACAAAATGACAAACCATTTAGACCAAATGTTGCGATTTCTCGAGCATGAAATGTTTC
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * * * *
7506 GAAAACTGATCGAAGGAATGGATCGTCATGAATACTTTATGGATCCGAAATTATAGAAGAACTCG
66 GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTCG
** * * * * *
7571 TAAAAGTTTGTCAAGTTCTAAAGTTCATCCAAGC-TCCAAG-G-GAGACAATTCTCACATAGATA
131 TAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAA-CAACCAAGAGAGAAACAATTCTCACGTAAATA
*
7633 AGTTTTTAATTTAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * * *
7655 TGTTGTTTACCAAATGA-AAAGCCATTTAGAACAAATGTTGTGATTTCCCGAGCATGAAAAATGT
1 AGTTGTTTACAAAATGACAAA-CTATTTAGACCAAATGATGCGATTTCCCGAGCATG--AAATGT
* * * * *
7719 TTCGAAAACTGATCAAAGGAATGGATCGCCTTGAATACTTTAAGGAACTGAAGTTACAGAAGAAC
63 TTAGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAAC
* *
7784 TCGTAAAAGTTTGTCAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAA
7849 TAAGTTTTTAATTCAAAGACCAAA
193 TAAGTTTTTAATTCAAAGACCAAA
* * * * *
7873 AGTTGTTTACAAAATGAAAAACCATTTAGAACAAATGTTGTGATTTCCCGAGCATGAAAAATGTT
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG--AAATGTT
* * * * * *
7938 TCGAAAACTAATCGAAGGAACGGATCGTCTTGAATACATTAAGGAACTGAAGTTACAGAAGAACT
64 TAGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACT
* ** ** *
8003 CGTAACAGTTTGTCAAGTTCAAAAGTTCGTCCAACCTCCAAG-GTAGAAACAATTCTCACATAAA
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAG-AGAAACAATTCTCACGTAAA
8067 TAAGTTTTTAATTCAAAGACCAAA
193 TAAGTTTTTAATTCAAAGACCAAA
* * * * * *
8091 AGTTGTTTAGAAAATGACAAACTATTAAGACTAAATGATGAGATTTCTCGAGCATGTAATG-TTA
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * ** * * *
8155 AAAAATTTGTTTGAATTAATGGATTGTCTTGATTACTTTAAGGAACCGAAGTTATAGAAGAACTC
66 GAAAA-TTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTC
* ** * *
8220 GTAAAAGTTTGTGAAGTTTAGAAGTTCGTCCAACAACTAAGGGAGAAACAATTCTCACGTAAATA
130 GTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
*
8285 AGTTTTTAATTCAAAAACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * * * *
8307 AGTTGTTTACAAAATGACAAACCATTTAAAACAAAAGTTACGATTTCCCGAGCATGAAATGTTTC
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
** * * * *
8372 GAAAGCTGATTGAAGGAATGGATCGTCATGAATACTTTAAGGATCCGAAGTTATAGAAGAACTCG
66 GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTCG
* * *
8437 TAAAAGTTTGTCAAGTTTGGAAGTTCGTCCAAGC-TCCAAGAGAGAAACAATTTTCACGTAAATA
131 TAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAA-CAACCAAGAGAGAAACAATTCTCACGTAAATA
8501 AGTTTTTAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * ** * * * *
8523 TGTTGTTTACCAAATGAAAAACTATTTAGAAAAAATGATGGGATTTCCCAAGCATGGAATGTTCA
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * *
8588 GAAAATTGCTCGAAGGAATGGATCGTCATGAATACTTTATGGAACT-AATGTTCTA-AATGAACT
66 GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAA-GTTATAGAA-GAACT
* * * * * * ** *
8651 TG-AAAATTTTGCCAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAGCTCTCACATAAAT
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
8715 AAGTTTTTCATTCAAATAACAAA
194 AAGTTTTTAATTCAAAGACCAAA
* * * * * *
8738 AGTTGTTTAGAAAATGACAAAGTATTTTA-ACCAAATGATCCAATTTCCCGAGCATGGAATGTTA
1 AGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTT
* * * * * * * * *
8802 AAAAAATTGCTCTAAGGAATGAATTGCCTTAAATACTTTAAGAAACAGAAGTTATAGAAGAACTC
65 AGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTC
* * * * * *
8867 GTAAAAGTATGTCAAGTTTGGAAGTTCGTCCAAGATCCAAGAGAGAAACAATTCTAACTTAAATA
130 GTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
*
8932 AGTTTTTAATTCAAAGGCCAAA
195 AGTTTTTAATTCAAAGACCAAA
* ** * *
8954 AGTTGTTTACAAAATGACAAACCATTTAGACCAAATGATGTTATATCCCGAGCAT-AGAATGCTC
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGA-AATG-TT
* * * * * *
9018 T-GCAAATTAATCCAAGGAGTGGATCGTCTTGAATACTTTAAGGAACTGAAGTTACAAAAGAACT
64 TAGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACT
* * * * * * * *
9082 CGTTAAAGTTTGCCAAGCTAGGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACATACAT
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
9147 AAGTTTTTAATTCAAAGACCAAA
194 AAGTTTTTAATTCAAAGACCAAA
* * ** * * *
9170 AGTTTTTTA-AATAATGACAAACTATTAAGATTAAATAATGTGATTTCCCGAGCATGTAATGTTA
1 AGTTGTTTACAA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTT-
* * * * * *
9234 AAAAAAATT-CTCGAAGGAATGAATTGTCTTGATTACTTTAAGGAACTGAAGTTATAGAAGAACT
64 TAGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACT
* * *
9298 CGTAAAAGTTTGTGAAGTTTGCAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
9363 AAGTTTTTTAATTCAAAGACCAAA
194 AAG-TTTTTAATTCAAAGACCAAA
* * ** *
9387 AGTTGTTTACAAAATGACAAACCATTTAGACCAAATGTTTTGATTTCCCGAGCATGAAATGTTTC
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * * * ** *
9452 GAAAACTAAACGAAGGAATGGATCGTCATGAATACTTTATGGATTTGAAATTATAGAAGAACTCG
66 GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTCG
* * *
9517 TAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGC-TCCATGAGAGAAA-ATATTCTCACGTAAAT
131 TAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAA-CAACCAAGAGAGAAACA-ATTCTCACGTAAAT
* *
9580 AAGTTTTTAATTTAAAAACCAAA
194 AAGTTTTTAATTCAAAGACCAAA
** * * ** * * *
9603 TTTTGTTTACCAAATGAAAAACTATTTAGAAAAAATGATGCAATTTCCCTG-GCATGGAATGTTC
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC-GAGCATGAAATGTTT
* * * * * * * * * *
9667 AAAAAATTGCTTGAAGGAAAGGATCGTCATGAATACTTTAAGGAACTAAAGTTTTAAAAGAATTT
65 AGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTC
* * * * * * *
9732 GTAAAAGCTTGTCAAGTTCGAAAGTTTGTCCAAGATCCAAGAGAGAAACAATTTTCACATAAATA
130 GTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
*
9797 AGTTTTTAATTCAAAGGCCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * *
9819 AGTTGTTTACAAAATGACAAACCATTTAGACCAAATGTTGTGATTTCCCGAGCGTGAAATGTTTC
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * * * * *
9884 TAAAACTAATTGAAGGAATGGATCGTCATGAATACTTTACA--AATCTGAAATTATGGAAGAACT
66 GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAA-CTGAAGTTATAGAAGAACT
* * * *
9947 CATAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGC-TCCAAGAGAGAAACAATTCTCACATAAA
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAA-CAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
10011 AAAGTTTTTAATTTAAAGGCCAAA
193 TAAGTTTTTAATTCAAAGACCAAA
* * ** * * ** * * *
10035 TGTTTTTTACAAAATGACAAACTATTTAGAAAAAATGATACAATTTCCTAAGAATGGAATG-TTC
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * * ** *
10099 GAAAAATTGCTCAAAGGAATGGATTGTCATT-AATACTTTATA-GATCTGGTGTTATAAAAGAAC
66 G-AAAATTGATCGAAGGAATGGATCGTC-TTGAATACTTTA-AGGAACTGAAGTTATAGAAGAAC
* * * * * * * *
10162 TCGAAAAAGTATGTCAAGTTTGGAAGTTTGTCCAAGATCCAAGAGAGAAACAATTCTAACTTAAA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAA
*
10227 TAAGTTTTTAATTCAAAGGCCAAA
193 TAAGTTTTTAATTCAAAGACCAAA
* * *
10251 AGTTGTTTACAAAATG---------GT--ACCAAATGATGCGATTTCCCGAGCATGGAATGCTCT
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATG-TTT
* * * * *
10305 -GAAAAGTAATCCAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTACAAAAGAACTC
65 AGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTC
** * * * * *
10369 GTAAAAGTTTACCAAGCTAGGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTACATA
130 GTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
10434 AGTTTTTAATTTAAAGACAAAA
195 AGTTTTTAATTCAAAGACCAAA
* * ** * * * * *
10456 AGTTGTTTAGAAAATGAAAAACTATCAAGACTAAACGATGCGATTTCCCGAGCATGTATTGTTAA
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * * * * *
10521 AAAAATTGCTCGAAGAAATGGATTGTCTTCATTACTTTAAGGAACCGAAGTTATAGAAGAACTCG
66 GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTCG
* * *
10586 TAAAACGTTTGTGAAGTTCAGAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
131 TAAAA-GTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
*
10651 AGTTTTTAATTCAAAGACTAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * * *
10673 AGTTGTTTACAAAATGACAAACCATTTAGATCAAATGTTGCAATTTCTCGAGCATGAAATGTTTT
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
* * * * * * *
10738 GAAAACTGATCGATGGAATGGATCGTCATGAATACTTTATGGATCCGAAATTATAGAAGAACTCG
66 GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTCG
* * * *
10803 TAAAAGTGTGTCAAGTTCGTAAGTTCATCCAAGC-TCCAAGAGAGAAACAATTCTCACGTAAATA
131 TAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAA-CAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
10867 AGTTTATAATTTAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * ** * * * **
10889 TGTTGTTTACCAAATGAAAAACTATTTAGAAAAAAATGATGCTATTTCCCAAGCATGGAATGTCC
1 AGTTGTTTACAAAATGACAAACTATTTAG-ACCAAATGATGCGATTTCCCGAGCATGAAATGTTT
* * * * * *
10954 AGAAAATTGCTCGAAGGAATGGGTCGTCATT-AATACTTTATGGATCTGATGTTATAAAAGAACT
65 AGAAAATTGATCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACTGAAGTTATAGAAGAACT
* * * *
11018 CGTAAAAGTATGTCAAGTTTGGAAGTTCGTCCAAGAACCAAGAGGGAAACAATTCTCACGTAAAT
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
11083 AAGTTTTTAATTCAAAGACCAAA
194 AAGTTTTTAATTCAAAGACCAAA
* * * *
11106 AGTTGTTTAAAAAATGACAAACCATTTA-AACAAATGTTGCGATTTCCCGAGCATGAAAAAT-TT
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG--AAATGTT
* * * * * *
11169 TCCGAAAACTGATCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTAAAGTTACAAAAGAAC
64 T-AGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAAC
* * * *
11234 TCGTAAAAGTTTGTCAAGTTCGAAAGTTAGTCCAAGC-TCCAAGAGGGAAACAATTCTCACGTAA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAA-CAACCAAGAGAGAAACAATTCTCACGTAA
* *
11298 ATAAGTTTTTAATCCAAAGATCAAA
192 ATAAGTTTTTAATTCAAAGACCAAA
* * * * * * * * * *
11323 AGTTTTTTAGAAAATGACAAACTGTTAAGGCTAAATGATGAGATTTCCTGAGCATGTAATGTTAA
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTT-T
* * * * *
11388 AAAAAATTGCTCAAAGGAATGGATTGTCTTGATTACTTTAAGGAAC
65 AGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
11434 CGCTTAAGGT
Statistics
Matches: 3487, Mismatches: 641, Indels: 156
0.81 0.15 0.04
Matches are distributed among these distances:
204 3 0.00
205 161 0.05
206 1 0.00
207 2 0.00
211 21 0.01
213 3 0.00
214 85 0.02
215 218 0.06
216 1928 0.55
217 754 0.22
218 308 0.09
219 3 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATGTTTA
GAAAATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAGAAGAACTCG
TAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAA
GTTTTTAATTCAAAGACCAAA
Found at i:14208 original size:181 final size:180
Alignment explanation
Indices: 13985--14342 Score: 513
Period size: 181 Copynumber: 2.0 Consensus size: 180
13975 TAAATTATAG
* *
13985 AAGAACATGTAAAAGTTTGTCAAGTTCGGAAGTTCATCCAAGCTCCAAGAGAGAAACAACTCTCA
1 AAGAACATGTAAAAGTTTGTCAAGTTCGGAAGTTCATCCAAGCACCAAGAAAGAAACAACTCTCA
* * * *
14050 CATAAATA-AGTTTTTAATTTAAAGACCAAATGTTTTTTGCCAAATGAAAAACTATTTAGAAAAA
66 CATAAA-AGAGTTTTTAATTCAAAGACCAAATGTTGTTTACCAAATGAAAAACTA-ATAGAAAAA
14114 ATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTACTCGAAGGAAAAA
129 ATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTACTCGAAGGAAAAA
* *
14166 AAGAAC-TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAAGCACCAAGAAAGAAACAATTCTC
1 AAGAACAT-GTAAAAGTTTGTCAAGTTCGGAAGTTCATCCAAGCACCAAGAAAGAAACAACTCTC
** ** * *
14230 ATGTAAAAGAGTTTTTAATTCAAAGACCAAATGTTGTTTACCAAATGAAAATTTAATCGGAAAAA
65 ACATAAAAGAGTTTTTAATTCAAAGACCAAATGTTGTTTACCAAATGAAAAACTAATAGAAAAAA
* * * *
14295 TGATGTGATTTCCTAAGCATGGAATGTTGGAAAAATTGCTCGAAGGAA
130 TGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTACTCGAAGGAA
14343 TGGATCGTCA
Statistics
Matches: 157, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
180 53 0.34
181 104 0.66
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (180 bp):
AAGAACATGTAAAAGTTTGTCAAGTTCGGAAGTTCATCCAAGCACCAAGAAAGAAACAACTCTCA
CATAAAAGAGTTTTTAATTCAAAGACCAAATGTTGTTTACCAAATGAAAAACTAATAGAAAAAAT
GATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTACTCGAAGGAAAAA
Found at i:14575 original size:214 final size:214
Alignment explanation
Indices: 14164--14620 Score: 555
Period size: 214 Copynumber: 2.1 Consensus size: 214
14154 TCGAAGGAAA
* *
14164 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAAGCACCAAGAAAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTCGTCCAAGAACCAAGAAAGAAACAA-TCT
* * * * *
14229 CATGTAAAAGAGTTTTTAATTCAAAGACCAAATGTTGTTTACCAAATGAAAATTTAATCGGAAAA
65 CACGTAAAAGAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAATGTAATCAGAAAA
* * ** *
14294 ATGATGTGATTTCCTAAGCATGGAATGTTGGAAAAATTGCTCGAAGGAATGGATCGTCATGAATA
130 ATGATGCGATTTCCCAAGCATGGAATGTTCCAAAAATTGCTCGAAGGAATGGATCATCATGAATA
* * *
14359 CTTTATGGAACT-GATGTTAT
195 CTTTA-AGAAATAGAAGTTAT
* *
14379 AAAAGAACTCGTAAAA-TTTTTCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA-CT
1 AAAAGAACTCGTAAAAGTTTGT-CAAGTTCAGAAGTTCGTCCAAGAACCAAGAAAGAAACAATCT
* * * *
14442 CACGTAAATA-AGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAA-GTATTTAGAC
65 CACGTAAA-AGAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-AAATGTAATCAGA-
* * * * * * *
14505 CAAATGATGCGATTTCCCGAGCATGGAATTTTCCAAAAATTTCTCTAAGGAATGGATTATCTTGA
127 AAAATGATGCGATTTCCCAAGCATGGAATGTTCCAAAAATTGCTCGAAGGAATGGATCATCATGA
14570 ATACTTTAAGAAATAGAAGTTAT
192 ATACTTTAAGAAATAGAAGTTAT
* *
14593 AGAAGAACTCGTAAAAGTATGTCAAGTT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTT
14621 TGAAAGTTCG
Statistics
Matches: 205, Mismatches: 31, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
213 53 0.26
214 97 0.47
215 55 0.27
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
AAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTCGTCCAAGAACCAAGAAAGAAACAATCTC
ACGTAAAAGAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAATGTAATCAGAAAAA
TGATGCGATTTCCCAAGCATGGAATGTTCCAAAAATTGCTCGAAGGAATGGATCATCATGAATAC
TTTAAGAAATAGAAGTTAT
Found at i:21145 original size:216 final size:216
Alignment explanation
Indices: 20729--23677 Score: 2345
Period size: 216 Copynumber: 13.5 Consensus size: 216
20719 CGTAAATAAG
* ** * * * *
20729 TTTAGACCAAATGTTATGATTTCTCGAGCATGAAATGTTTC-GAAAACTGATCGAAGGAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * *
20793 CGTCATGAATACTTTATGGATCCGAAATTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGGAAG
65 CGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAG
** * * * **
20858 TTCATCCAAGCTCCAAGAGAGAAACAATTCTCACATAAATAAGTTTTAAATTTAAAGACCAAATC
130 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* *
20923 TTGTTTACCAAACGAAAAACTA
195 TTGTTTACAAAATGAAAAACTA
** * * * *
20945 TTTAGAAAAAATGATGTGATTTCCCAAGCATGTAATGTTCAGAAAATTGCTCGAAGGAAAGGATC
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
* * * * * * * *
21010 GTCATGAATCCTTTAAGGAACTGAAATTTTAAAAGAATTTGTAAAAGCTTCCCAAGTTCGAAAGT
66 GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAGT
* * * * * * *
21075 TCGTCCAAGATCCAAGAGAGAAACCATTCTAACTTAAATAAGCTTTTAATTCAAAGGCCAAAAGT
131 TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * *
21140 TGTTTACAAACTGACAAACCA
196 TGTTTACAAAATGAAAAACTA
* * * ** *
21161 TTTAGACCAAATGATGCGATTTCCCCA-CATGGAATGCTCTGAAAAATTAATCAAAGGAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGAT
* * * * ** * * * *
21225 TGTCTTGAATACTTTAAGAAACTGAAGTTACAAAAGATTTCATGAAAGTTTGCCAAGCTAGGAAG
65 CGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAG
* * * * * *
21290 TTCATCCAAGAACCAAGAAAAAAACAACTCTCACATACATAGGTTTTTAATTCAAAGACCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* *
21355 TTGTTTAGAAAATGACAAACTA
195 TTGTTTACAAAATGAAAAACTA
* * * * * * * * * *
21377 TTAAGACGAAAAGATTCAATTTCCCAAGCATGTAATGTTAAAAAAATTGCT-GGAGGAAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGG-AATGGAT
* * ** * * ** *
21441 TGTCTTGTTTACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTGAAGTTCGAAAG
65 CGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAG
** *
21506 TTTGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* *
21571 TTGTTTACAAAATGACAAACCA
195 TTGTTTACAAAATGAAAAACTA
* * * ** * *
21593 TTTAGACCAAATGTTGCGATTTCTCGAGCATGAAATGTTTTGAAAACTGATCGAAGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
** * * * * *
21658 GTCATGAATACTTTGTGGATCCGAAATTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGT
66 GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAGT
* ** * * * * *
21723 TCGTCCAAGCTCCAAGAGAGAAATAATTCTCATGTAAATAATTTTTTAATTTAAAGACCAAATGT
131 TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
*
21788 T-TATTACCAAATGAAAAACTA
196 TGT-TTACAAAATGAAAAACTA
** * * *
21809 TTTAGAAAAAATGATGCGATTTCCCAAGCAT-GAATGTTCAAAAAATTGCTTGAAGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
* *
21873 GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTTCCAAGTTTGGAAGT
66 GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAGT
* * * *
21938 TCATCCAAGAACCAAGATAGAAATAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAAGT
131 TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * *
22003 AGTTTAGAAAAAGAAAAATTA
196 TGTTTACAAAATGAAAAACTA
** * * * *
22024 TTTAGACCAAATGATGTAATTTCCCGAGCAAGGAATGTTCAAAAAATTTCTCCAAGGAATGGATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA-T
* * * ** * *
22089 C-TCCTGAATACTTTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAG
65 CGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAG
* * * * * ** *
22153 TTCATCTAAGAACCAAAAGAAAAACAACTCT-ACGTAAATAGGTTTTTAATTCAAAGATAAAAAA
130 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
*
22217 TTGTTTAGAAAATGAAAAACTA
195 TTGTTTACAAAATGAAAAACTA
* * ** * *
22239 TTTATACAAAATGATATGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCAAAGGAATGGTT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGAT
* * * * *** *
22303 CGTCATGAATACTTTAAGGAAATGAAGTTTTAAAAGAACAT-GCAAAACTTCATCAAGTTCGAAA
65 CGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAAC-TCGTAAAAGTTTGCCAAGTTCGGAA
* * ** * *
22367 GTTCGTCTAAGAAGAAAGAGA-AAAGCAATTCTCACGTAAATAAGATTTTAATTTAAAGACCAAA
129 GTTCATCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
22431 AGTTGTTTACAAAATGACAAACTA
193 AGTTGTTTACAAAATGAAAAACTA
* * * * * * * *
22455 TTTAAACCAAACGACGCGATTTCTCGAGCACGGAATGTTCAGAAAATTGCTTGAAGGAATGTATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
** * * * * * * *
22520 GTCATGAATACTTTAAGGAACAAAAGTTATAGATGGACTAGCAAAAGTTTTCCAAGTTCAGAAGT
66 GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAGT
* * * * *
22585 TTATCCAAGAACCAAGAGAGAAACAACTCTCATGTAAATAATTTTTTCATTCAAAGACCAAAAGT
131 TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* *
22650 TGTTTAGAAAATGAAAAAGTA
196 TGTTTACAAAATGAAAAACTA
* * * *
22671 TTTAGACCAAATGATGCGATTTCCCGAGCATCGAATGTTCAAAAAAATGCTCTAAGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
* ** * * *
22736 GTAATGAATACTTTCTGGAATTGAAGTTATAAAAGAACTCGTAAAAGTTTTCCAAGTTTGGAAGT
66 GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAGT
* * * ** ** ** **
22801 TCATACAAAAACCAAGATAGAAACAA--CT--CG-AAGGAAGTTCGTCCAAGAACAAAGAGAGAA
131 TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT--TTTAA-TTCAAAGA-CCAA
* * * * ***
22861 ACAATT-CTCACGTAAAT-AAGATTTTAA
192 A-AGTTGTTTAC-AAAATGAA-AAACT-A
* * *** * ** * * *
22888 TTTAAAGACCAAAAG-T-TG-TTTACAAAAGGA-CAAACTATTTAGACCAAA-TGATACGATTTC
1 TTT--AGACCAAATGATGCGATTT-CCCGAGCATGGAA-TGTTCAGA--AAATTGCT-CGA----
* * * * * *
22948 CGTGCATGGAAT-GT-TTGGAAAATTGCTTGAAGGAA-TGGATTGTCATGAATACTTTAAAGAAC
55 AG-GAATGG-ATCGTCAT-G--AA-TACTTTAAGGAACT-GA-AGT--T--ATA----AAAGAAC
** ** * ** *
23010 GAAAGTTATAGATGAACTGGTAAAAGTTTTCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
104 --TCG-TA-A-A--AGTTTG-CCAAG-T-T-C--G----GAAGTTCATCCAAGAACCAAGAGAGA
* * * * * *
23075 AACAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAAGTTATTTAGAAAATGACAAAGTA
152 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTA
** * * *
23140 TTTAGACCAAATGACACGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
* * * * * * * * *
23205 GTCTTGAATACTTTAA-TAAATCAAAGTTATAGAAGAACTCGCAAAAGTATGTCAAGTTTGGAAG
66 GTCATGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAG
* * * * * *
23269 TTCGTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTAAAAGACCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * **
23334 TTGTTTAGAAATTGGCAAACTA
195 TTGTTTACAAAATGAAAAACTA
* * * *
23356 TTTAGA-CATAATGATGTGATTTCCCGTGCTTGGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
1 TTTAGACCA-AATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * ** *
23420 CGTCATGAATACTTTAATGAACTGAAGTTTTAAAAGAACTCATAAAACTTCGTCTTGTTCAGAAG
65 CGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAG
* * * * * *
23485 TTCAACCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGACCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
*
23550 TTGTTTACAAAATGACAAACTA
195 TTGTTTACAAAATGAAAAACTA
* * * *
23572 TTTAGACTAAATTATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTACTAGAAGGAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGAT
* * *
23636 TGTCATGAATACTTTATGTAACTGAAGTTATAAAAGAACTCG
65 CGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
23678 AAGGATTGGA
Statistics
Matches: 2157, Mismatches: 488, Indels: 176
0.76 0.17 0.06
Matches are distributed among these distances:
211 6 0.00
212 1 0.00
213 2 0.00
214 13 0.01
215 374 0.17
216 1509 0.70
217 37 0.02
218 4 0.00
219 14 0.01
220 1 0.00
223 3 0.00
224 9 0.00
225 5 0.00
226 5 0.00
227 10 0.00
228 3 0.00
229 1 0.00
230 2 0.00
231 1 0.00
232 3 0.00
233 6 0.00
236 7 0.00
237 3 0.00
238 1 0.00
239 3 0.00
240 1 0.00
241 5 0.00
242 8 0.00
243 4 0.00
244 5 0.00
245 9 0.00
246 4 0.00
249 1 0.00
250 14 0.01
251 3 0.00
252 14 0.01
253 41 0.02
254 6 0.00
255 8 0.00
256 2 0.00
257 2 0.00
258 7 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAGT
TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
TGTTTACAAAATGAAAAACTA
Found at i:21547 original size:432 final size:431
Alignment explanation
Indices: 20729--28364 Score: 5923
Period size: 432 Copynumber: 17.5 Consensus size: 431
20719 CGTAAATAAG
* ** * * * *
20729 TTTAGACCAAATGTTATGATTTCTCGAGCATGAAATGTTTCG-AAAACTGATCGAAGGAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGAT
* * * * * * * * *
20793 CGTCATGAATACTTTATGGATCCGAAATTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGGAAG
65 TGTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAG
** * * * * **
20858 TTCATCCAAGCTCCAAGAGAGAAACAATTCTCACATAAATAAGTTTTAAATTTAAAGACCAAATC
130 TTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
** * * * * * * *
20923 TTGTTTACCAAACGAAAAACTATTTAGAAAAAATGATGTGATTTCCCAAGCATGTAATGTTCAGA
195 TTGTTTAGAAAATGACAAACTATTTAGACAAAA-GATGCGATTTCCCGAGCATGGAATGTTCAAA
* * * * * * *
20988 AAATTGCTCGAAGGAAAGGATCGTCATGAATCCTTTAAGGAACTGAAATTTTAAAAGAATTTGTA
259 AAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTA
* ** * * * * * *
21053 AAAGCTTCCCAAGTTCGAAAGTTCGTCCAAGATCCAAGAGAGAAACCATTCTAACTTAAATAAGC
324 AAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* * *
21118 TTTTAATTCAAAGGCCAAAAGTTGTTTACAAACTGACAAACCA
389 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * ** *
21161 TTTAGACCAAATGATGCGATTTCCCCA-CATGGAATGCTCTGAAAAATTAATCAAAGGAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGAT
* * ** * * * *
21225 TGTCTTGAATACTTTAAGAAACTGAAGTTACAAAAGATTTCATGAAAGTTTGCCAAGCTAGGAAG
65 TGTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAG
* * * * *
21290 TTCATCCAAGAACCAAGAAAAAAACAACTCTCACATACATAGGTTTTTAATTCAAAGACCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
21355 TTGTTTAGAAAATGACAAACTATTAAGACGAAAAGATTCAATTTCCCAAGCATGTAATGTTAAAA
195 TTGTTTAGAAAATGACAAACTATTTAGAC-AAAAGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * ** * *
21420 AAATTGCT-GGAGGAAATGGATTGTCTTGTTTACTTTAAGGAACCGAAGTTATAGAAGAACTCGT
259 AAATTGCTCGAAGG-AATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * *
21484 AAAAGTTTGTGAAGTTCGAAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAG
323 AAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAG
*
21549 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCA
388 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * * *
21593 TTTAGACCAAATGTTGCGATTTCTCGAGCATGAAATGTTTTG-AAAACTGATCGAAGGAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGAT
* ** * * * * * *
21657 CGTCATGAATACTTTGTGGATCCGAAATTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG
65 TGTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAG
* ** * * * * * *
21722 TTCGTCCAAGCTCCAAGAGAGAAATAATTCTCATGTAAATAATTTTTTAATTTAAAGACCAAATG
130 TTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
** * * *
21787 TT-TATTACCAAATGAAAAACTATTTAGAAAAAATGATGCGATTTCCCAAGCAT-GAATGTTCAA
195 TTGT-TTAGAAAATGACAAACTATTTAGACAAAA-GATGCGATTTCCCGAGCATGGAATGTTCAA
* *
21850 AAAATTGCTTGAAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
258 AAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * *
21915 AAAAGTTT-TCCAAGTTTGGAAGTTCATCCAAGAACCAAGATAGAAATAACTCTCACGTAAATAA
323 AAAAGTTTGT-CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
* * * * * *
21979 GTTTTTCATTCAAAGACCAAAAGTAGTTTAGAAAAAGAAAAATTA
387 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
** * * * *
22024 TTTAGACCAAATGATGTAATTTCCCGAGCAAGGAATGTTCAAAAAATTTCTCCAAGGAATGGATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* * * ** *
22089 CTCCTGAATACTTTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAGT
66 GTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAGT
* * * * ** *
22154 TCATCTAAGAACCAAAAGAAAAACAACTCT-ACGTAAATAGGTTTTTAATTCAAAGATAAAAAAT
131 TCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * ** *
22218 TGTTTAGAAAATGAAAAACTATTTATACAAAATGATATGATTTCCCGAGCATGGAATGTTCGAAA
196 TGTTTAGAAAATGACAAACTATTTAGACAAAA-GATGCGATTTCCCGAGCATGGAATGTTCAAAA
* * * *
22283 AATTGCTCAAAGGAATGG-TTCGTCATGAATACTTTAAGGAAATGAAGTTTTAAAAGAACAT-GC
260 AATTGCTCGAAGGAATGGATT-GTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAAC-TCGT
* ** * ** *
22346 AAAACTTCATCAAGTTCGAAAGTTCGTCTAAGAAGAAAGAGA-AAAGCAATTCTCACGTAAATAA
323 AAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAA-CAACTCTCACGTAAATAA
* *
22410 GATTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
387 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * * * *
22455 TTTAAACCAAACGACGCGATTTCTCGAGCACGGAATGTTC-AGAAAATTGCTTGAAGGAATGTAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* ** * * * * *
22519 TGTCATGAATACTTTAAGGAACAAAAGTTATAGATGGACTAGCAAAAGTTT-TCCAAGTTCA-GA
65 TGTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGT-CAAGTT-AGGA
* * * *
22582 AGTTTATCCAAGAACCAAGAGAGAAACAACTCTCATGTAAATAATTTTTTCATTCAAAGACCAAA
128 AGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * *
22647 AGTTGTTTAGAAAATGAAAAAGTATTTAGACCAAATGATGCGATTTCCCGAGCATCGAATGTTCA
193 AGTTGTTTAGAAAATGACAAACTATTTAGA-CAAAAGATGCGATTTCCCGAGCATGGAATGTTCA
* * * * ** *
22712 AAAAAATGCTCTAAGGAATGGATCGTAATGAATACTTTCTGGAATTGAAGTTATAAAAGAACTCG
257 AAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * * * * **
22777 TAAAAGTTT-TCCAAGTTTGGAAGTTCATACAAAAACCAAGATAGAAACAA--CT--CG-AAGGA
322 TAAAAGTTTGT-CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
** ** ** * * * * * * ***
22836 AGTTCGTCCAAGAACAAAGAGAGAAACAATT-CTCACGTAAATAAGATTTTAA
386 AGTT--TTTAA-TTCAAAGA-CCAAA-AGTTGTTTAC-AAAATGACAAACT-A
* * * * *
22888 TTTAAAGACCAAAAGTTGTTTACAAAAGGACAAACTATTTAGACCAAATGATACGATTTCCGTGC
1 TTT--AGACC-AAA--TG--------ATG-----CGATTT---CC---CGA-GC-A--T--G-GA
* * * *
22953 ATGGAATGTTTGGAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAA-AGAAC-GAAAGT
35 AT-GT----TCGAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGA-AACTG-AAGT
* * * *
23016 TATAGATGAACTGGTAAAAGTTT-TCCAAGTTCA-GAAGTTCGTCCAAGAACCAAGAGAGAAACA
93 TATAAAAGAACTCGTAAAAGTTTGT-CAAGTT-AGGAAGTTCATCCAAGAACCAAGAGAGAAACA
* * *
23079 ACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAAGTTATTTAGAAAATGACAAAGTATTTA
156 ACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTA
* ** * *
23144 GACCAAATGACACGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCT
221 GA-CAAAAGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCA
* * * * * * * *
23209 TGAATACTTTAA-TAAATCAAAGTTATAGAAGAACTCGCAAAAGTATGTCAAGTTTGGAAGTTCG
285 TGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG
* * * *
23273 TCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTAAAAGACCAAAAGTTGT
349 TCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * *
23338 TTAGAAATTGGCAAACTA
414 TTACAAAATGACAAACTA
* * * *
23356 TTTAGA-CATAATGATGTGATTTCCCGTGCTTGGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
1 TTTAGACCA-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * * * **
23420 CGTCATGAATACTTTAATG-AACTGAAGTTTTAAAAGAACTCATAAAACTTCGTCTTGTTCA-GA
65 TGTCATGAATACTTTAA-GAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT-AGGA
* * * * *
23483 AGTTCAACCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGACCAAA
128 AGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* ** *
23548 AGTTGTTTACAAAATGACAAACTATTTAGACTAAATTATGCGATTTCCCGAGCATGGAATGTTCG
193 AGTTGTTTAGAAAATGACAAACTATTTAGAC-AAAAGATGCGATTTCCCGAGCATGGAATGTTCA
* * * *
23613 AAAAATTACTAGAAGGAATGGATTGTCATGAATACTTTATGTAACTGAAGTTATAAAAGAACTCG
257 AAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * * * *
23678 -AAGGATTGGATTGTC-A--T-GAATACTT--T--AATGAACCAA-ATTTATAGAACAACTGGTA
322 TAA--A--AGTTTGTCAAGTTCGAA-AGTTCGTCCAA-GAACCAAGA--GAGA-AACAACT-CT-
* * * * * **
23733 AAAGATTCTGAAGTTCGCAAGTTTGTCCATGATCCAAGAGATAATAAATTCTCACGTAAATAAGT
376 CACG----T-AA-AT---AAGTTT-T---TAATTCAA-AG--ACCAAA-----A-GT---T--GT
**
23798 TTTTAATTCAATGACAAACTA
414 TTACAA---AATGACAAACTA
* * * * * * * *
23819 TTTAGACAAAATGATGTGATTTCTCAAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGCATC
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* * * * * *
23884 GTCATGAATTCTTTAGAGAATC-GAAGTTATAGAAGAATTTGTCAAAGTTTGTCAAGTTTA-GAA
66 GTCATGAATACTTTA-AGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-TTAGGAA
* * ** * *
23947 GTTCATCCAATATCCAAGAGAGAAACAACTCTCACGTAAATAACATTTTAATTTATAGACCAAAA
129 GTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAA
* * * * ** * * * * *
24012 ACTTATTTACAAAATGACAAACTATTCAGACTAAATTATGAGATTTTCGGAACATTGG-ATGTTT
193 AGTTGTTTAGAAAATGACAAACTATTTAGAC-AAAAGATGCGATTTCCCGAGCA-TGGAATGTTC
** * ** * * *
24076 GGAAAATTACTCGAAGGAATGGATCATCATGAATAATTTATGGAACTGAAGTTTTAAAAGAACTC
256 AAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* * * * *
24141 GTAAAAGTTTGCCAAGTTCGAAAGTTCATCCAAGAACCCAGATAGAAATAACTCTCACGTAAATA
321 GTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
* *
24206 AGTTTTTCATTC--A-A-C-AAAG-TATTT-----A-G----AC--
386 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * *
24234 --T--A--AATTG-TGCGATTTCCCGAGCATGAAATGTTC-AGAAAATTGTTCGAAAGAATGGAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* * * * * *
24291 CGTCATGAATACTTTACGGAACTGAAGTTATAAAAGAACTCTTAAAACTTCGTCAAGTTCA-GAA
65 TGTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT-AGGAA
* * * * * *
24355 GTTCGTCTAAGAA-CAGAGTGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGACCAAA
129 GTTCATCCAAGAACCA-AGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * **
24419 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTG
193 AGTTGTTTAGAAAATGACAAACTATTTAGA-CAAAAGATGCGATTTCCCGAGCATGGAATGTTCA
* * * * * * *
24484 GAAAATTGCTTGAAGGAATGGATTGTCATGAATTCTTTAAAGAAC-GAAAGTTATAGATGAACTG
257 AAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTG-AAGTTATAAAAGAACTC
* *
24548 GTAAAAGTTT-TCCAAGTTC-AGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCATGTAAA
321 GTAAAAGTTTGT-CAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAA
* * * *
24611 TAAGTTTTTCATTCAAAGACCAAAAGTTATTTAGAAAATGACAAAGTA
384 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* *
24659 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
** * * * *
24724 GTTTTGAATACTTTAAGAAA-TCAAAGTTATAGAAGAACTCGTAAAAGTATGTCAAGTTTGGAAG
66 GTCATGAATACTTTAAGAAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAG
* * * *
24788 TTCGTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTCAAAGACCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
24853 TTGTTTAGAAAATGAAAAACTATTTTAGACAAAATGATGCGATTTCCCGTGCTTGGAATGTTCGA
195 TTGTTTAGAAAATGACAAACTA-TTTAGACAAAA-GATGCGATTTCCCGAGCATGGAATGTTCAA
* * *
24918 AAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGT
258 AAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* ** * ** * *
24983 AAAACTTCATCATGTTC-AGAAGTTCAACCAACAACAAAGAGAGAAACAACTCTCACGTAAATAA
323 AAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
* * * *
25047 CTTTTTAATTTATAGACAAAAAGTTGTTTACAAAATGACAAACTA
387 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * ** *
25092 TTTAGACTAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACGAGAAGGAATGAATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* * *
25157 GTCATGAATACTTTATGTAACTGAAGTTATAAAAGAACTCG-AAGGAATGGATTGTC-A--T--G
66 GTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAA--AA--GTTTGTCAAGTTAGG
* ** * * * * * *
25216 AA-TAC-TTTAATGAACCAA-ATTTATAGAACAACTGGTAAAAGCTTGTGAAGTTCGCAACTTTG
127 AAGTTCATCCAA-GAACCAAGA--GAGA-AACAACT-CT--CA-C--GT-AA-AT---AAGTTT-
* * ** **
25278 TCCATGATCCAAGAGATAATAAATTCTCACGTAAATAAGTTTTTAATTCAATGACAAACTATTTA
176 T---TAATTCAA-AG--ACCAAA-----A-GT---T--GTTTAGAA---AATGACAAACTATTTA
* * * * * *
25343 GACAAAATGATGTGATTTCCCAAACATGAAATGTTCAAAAAATTGCTCGAAGGAATGCATCGTCA
221 GACAAAA-GATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCA
* * * * *
25408 TTAATACTTT-AGAGAACCGAAGTTATAGAAGAACTCGTCAAAGTTTGTCAAGTT-TAGAAGTTC
285 TGAATACTTTAAG-GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTC
* * * * ** * * *
25471 ATCCAATATCCAAGAGAGAAAAAACTCTCACGTAAATAACATTTTAATTTATAGACCAAAAACTT
348 GTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTT
*
25536 GTTTACAAAATGAAAAACTA
412 GTTTACAAAATGACAAACTA
* * * * * * ** * * *
25556 TTCAGACTAAATTATGTGATTTTCAGAGCATTAAATGTTCGGAAAATTACTCGAAGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* * * * * *
25621 ATCATGAATAATTTATGATACTGAAGTTATAAAAGAACTCGTAAAAGTTTG-CTAAGCTCGGAAG
66 GTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTC-AAGTTAGGAAG
* * * *
25685 TTCATCCAAGAACCAAGATAGAAATAACTCTCACGTAAATAAGTTTTTCATTCAAAGTCCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* *
25750 TAGTTTAGAAAATGAC-AA--A-TT---------ATGCGATTTCTCGAGCATGGAATGTTCAAAA
195 TTGTTTAGAAAATGACAAACTATTTAGACAAAAGATGCGATTTCCCGAGCATGGAATGTTCAAAA
* * * * * * **
25802 AATTGCACTAAGGAATGGATTGTTC-TGAATACTATAAGAAACCGATGTTATTGAAGAACTCGTA
260 AATTGCTCGAAGGAATGGATTG-TCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTA
* * * * * *
25866 AAAGTTTGTCAAGTTTGGAAGTTCTTCTAAGAACCAAGAGAAAAACAACTCTCACGTAAATAGGT
324 AAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* ** * *
25931 TTCTAATTCAAAGATAAAAAGTTGTTCAGAAAATGACAAACTA
389 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * *
25974 TTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* * * * * * ** * *
26039 ATCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATCAAGTTTGAAAGT
66 GTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAGT
** * * *
26104 TTGTCCAAGAA-CATACAGAGAAACAATTCTCACGTAAATAA-TATTTTAATTTAAAGACCAAAA
131 TCATCCAAGAACCA-AGAGAGAAACAACTCTCACGTAAATAAGT-TTTTAATTCAAAGACCAAAA
* ** * *
26167 GTTGTTTACAAAATGACAAACTATTTAGACTAAATTATTCGAATTCCCGAGCATGGAATG-TCAA
194 GTTGTTTAGAAAATGACAAACTATTTAGAC-AAAAGATGCGATTTCCCGAGCATGGAATGTTCAA
* * * ** ** * * * *
26231 AAAATTACTCGAAGGAATGGGTTGTCATGAACACTTTATTGAACCAAAGTTATAGAACAATTGGT
258 AAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * * * *
26296 AAAAGTTTGTGAAGTTC-AGAAGTTTGTCCATGATCCAAGAGATAATA-AATTCTCACATAAATA
323 AAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAA-ACAACTCTCACGTAAATA
* * * *
26359 AGTTTTTAATTCAATGACCAAAAGTTGTATACCAAATGACAAAATA
386 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * * *
26405 TTTTGACAAAATGATGTGATTTCCCAAGCAAGGAATGTTC-AGAAAATTGCTCGAAGGAATGCAT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* * * * *
26469 CGTCATGAATACTTTAA-AGAACCGAAGTTATAGAAGAACTCGTCAATGTTTGTCAAGTTTA-GA
65 TGTCATGAATACTTTAAGA-AACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-TTAGGA
* * * * * *
26532 AGTTCATCCAATATCCAAGAGAGAAACAATTCTCATGTCAATAAGTTTTTCATTCAAAGACCAAA
128 AGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
** * * * * *
26597 AGTTGTTTACCAAATGACAAA-TAGTTTAGAGAAAATTATACGATTTCCCAAGCATGAAATGTTC
193 AGTTGTTTAGAAAATGACAAACTA-TTTAGACAAAA-GATGCGATTTCCCGAGCATGGAATGTTC
* ** * * * *
26661 AAAAAATTGCTTGAAGGAATGGATCATTATGAATACTTTACGAAACTGAAGTTATAAAAGAACTT
256 AAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* * * *
26726 GTAAAATTTTGCCAAGTTC-AGAAGTTCATCCAAGAACCAAGATAGAAACAACTCTCACGTAAAT
321 GTAAAAGTTTGTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAAT
* * * * *
26790 AAGTTTTTCATTCAAAGACCAAAAGTAGTTTAGAAAAGGACAAATTA
385 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
** * * * *
26837 TTTAGACCAAATGATGCGATTTCCCGAGCATAAAATGTTCAAAAAATTTCTCTAAAGAATGGATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* ** * * * *
26902 GTCCTGAATACTTTAAGAAACTGAAGTTATTGAAGAACTTGTAAAATTTTGTCTAGTTTGGAAGT
66 GTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAGT
* * * * * **
26967 GCATCTAAGAACCAAGAGAAAAATAACTCTCACGTAAATAGGTTTTTAATTCAAAGATAAAAAGT
131 TCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * *
27032 TGTTTAGAAAATGACAAACTATTTATACAAAGTGATGCGATTTCCTGTGCATGGAATGTTCGAAA
196 TGTTTAGAAAATGACAAACTATTTAGACAAA-AGATGCGATTTCCCGAGCATGGAATGTTCAAAA
* * * * *
27097 AATTGCTCGAAGGAATGGATCGTCATGAATACTTCAAGGAGCTGAAGTTTTAAAAGAACT-TTAA
260 AATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT-A
** ** * * * * * *
27161 AAACATCATCAATTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAAGTAAA-AAGA
324 AAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGT
* * * *
27225 TTTTAATTTAAAGAACAAAAGTTGTTTACGAATTGACAAACTA
389 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
** * * * *
27268 TTTAGACCAAATGATGTTATTTCCCGAGCATGGAACGTTTGGAAAATTGCTTGAAGGAATGGATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* * * * *
27333 GTCATGAATACTTTAAGGAAC-GAAAGTTATAGATGAACTGGTAAAAGATTT-CCAAGTTCA-GA
66 GTCATGAATACTTTAAGAAACTG-AAGTTATAAAAGAACTCGTAAAAG-TTTGTCAAGTT-AGGA
** * * *
27395 AGTTTGTCCAAGAGCCAAGAGAGAAATAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAA
128 AGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * *
27460 AGTTGTTTAGAAAATGACAAAGTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCA
193 AGTTGTTTAGAAAATGACAAACTATTTAGA-CAAAAGATGCGATTTCCCGAGCATGGAATGTTCA
** * * * * * *
27525 AAAAATAACTCTAAGGAATAGATTGTCTTGAATACTTTAA-GAAATCAAAGTTATAGAAGAACTC
257 AAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTC
* * * * * * *
27589 GTAAAAGTATGTCAAGTTTGGAAGTTCGTCTAAGAATCAAAAGAGAAACAACTCTCACATAAATA
321 GTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
* * * *
27654 GGTTTTTATTTCAAAGACCAAAAGTTTTTTAGAAAATGACAAACTA
386 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * **
27700 TTTAGA-CATAATGATGCGATTT-CCTATGCTTGGAATGTTCGAAAAATTGCTCGAAGGAAACG-
1 TTTAGACCA-AATGATGCGATTTCCCGA-GCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * * * * *
27762 TTCGTCATGAATACTTTAAGGAATTGAAGTTTTAAAAGAACTCATAAAACTTCGTCAAGTTCGTA
64 TT-GTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGA
* * * * * *
27827 AGTTCGTCCAAGAACAAAGAGAGAAACAACTCTCACTTAAATAACTTTTTAATTTATAGACCAAA
128 AGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * ** * * ** *
27892 AGTTGTTTACAAAATGTGTTCGAAA--AATTACTCGAAGGAATG-GATTGTCATGACTACTTTAT
193 AGTTGTTTAGAAAA--TG-AC-AAACTATTTAGACAAAAG-ATGCGATT-TCCCGA--GC---AT
* * *** * ** *
27954 GTAACTGAAGTT-ATAAAAGAACTCGAAGGAATGGATTGTCATGAATACTTTAATGAACCAAATT
247 GGAA-T---GTTCAAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGT
* * * * * * ** * * *
28018 TATAGAACAACTGGTAAAAGTTTGTGAAGTTCGGAAGTTTGTCCATCATCCAAAAGATAATA-AA
308 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA-ACAA
* * * * * *
28082 TTCTCATGTAAATAAGTTTTTAATTCAATGACCAAAAGTTATTTAGAAAATGACAAAGTA
372 CTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * ** *
28142 TTTAGACCAAATGACGTGATTTCCCGAGCATGGAATGTTTAAAAAATTGCTCTAAGGAATGGATT
1 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
* * * *
28207 GTCTTGAATACTTTAAGAAA-TCGAAGTTATAGAAGAACTCGTAAAAGTATGTCAAGTTTGGAAG
66 GTCATGAATACTTTAAGAAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAG
* * * * *
28271 TT-GTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTCGAAGACCAAAAG
130 TTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
28335 TTGTTTAGAAAATGACAAACTATTTAGACA
195 TTGTTTAGAAAATGACAAACTATTTAGACA
28365 TAATGATGTG
Statistics
Matches: 5772, Mismatches: 1117, Indels: 623
0.77 0.15 0.08
Matches are distributed among these distances:
406 5 0.00
407 179 0.03
408 141 0.02
409 5 0.00
410 1 0.00
411 2 0.00
412 4 0.00
413 6 0.00
417 5 0.00
418 194 0.03
419 142 0.02
420 4 0.00
421 2 0.00
422 3 0.00
423 1 0.00
427 7 0.00
428 5 0.00
429 18 0.00
430 114 0.02
431 1291 0.22
432 1797 0.31
433 323 0.06
434 19 0.00
435 12 0.00
436 21 0.00
437 8 0.00
438 6 0.00
439 15 0.00
440 3 0.00
441 68 0.01
442 250 0.04
443 20 0.00
444 3 0.00
446 7 0.00
447 14 0.00
448 2 0.00
449 6 0.00
450 18 0.00
451 5 0.00
453 2 0.00
454 13 0.00
455 5 0.00
456 2 0.00
457 4 0.00
458 6 0.00
459 5 0.00
460 7 0.00
461 16 0.00
462 5 0.00
463 333 0.06
464 258 0.04
465 26 0.00
466 13 0.00
467 15 0.00
468 14 0.00
469 299 0.05
470 6 0.00
471 7 0.00
472 3 0.00
473 1 0.00
474 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (431 bp):
TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATT
GTCATGAATACTTTAAGAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTAGGAAGT
TCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
TGTTTAGAAAATGACAAACTATTTAGACAAAAGATGCGATTTCCCGAGCATGGAATGTTCAAAAA
ATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAA
AGTTTGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTT
TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
Found at i:22493 original size:647 final size:647
Alignment explanation
Indices: 20729--28360 Score: 5582
Period size: 647 Copynumber: 11.7 Consensus size: 647
20719 CGTAAATAAG
* * * * * * * *
20729 TTTAGACCAAATGTTATGATTTCTCGAGCATGAAATGTTTC-GAAAACTGATCGAAGGAATGGAT
1 TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATG-TTCAAAAAATTGCTCGAAGGAATGGAT
* * * *
20793 CGTCATGAATACTTTATGGATCCGAAATTATAGAAGAACTCATAAAAGTTTGTCAAGTTCGGAAG
65 CGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG
** * * * * **
20858 TTCATCCAAGCTCCAAGAGAGAAACAATTCTCACATAAATAAGTTTTAAATTTAAAGACCAAATC
130 TTCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAA
* * * * * * *
20923 TTGTTTACCAAACGAAAAACTATTTAGAAAAAATGATGTGATTTCCCAAGCATGTAATGTTC-AG
195 TTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-
* * * * * * *
20987 AAAATTGCTCGAAGGAAAGGATCGTCATGAATCCTTTAAGGAACTGAAATTTTAAAAGAATTTGT
259 AAAATTGCTCGAAGGAATGGTTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * *
21052 AAAAGCTTCCCAAGTTCGAAAGTTCGTCCAAGATCCAAGAGAGAAACCATTCTAACTTAAATAAG
324 AAAA-CTTCTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * *
21117 CTTTTAATTCAAAGGCCAAAAGTTGTTTACAAACTGACAAACCATTTAGACCAAATGATGCGATT
388 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGACGCGATT
* * * ** ** * *
21182 TCCCCA-CATGGAATGCTCTGAAAAATTAATCAAAGGAATGGATTGTCTTGAATACTTTAAGAAA
453 TCCCGAGCATGGAATGTTC-AAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAA
* * ** *** * * * * *
21246 CTGAAGTTACAAAAGATTTCATGAAAGTTTGCCAAGCTAGGAAGTTCATCCAAGAACCAAGAAAA
517 CTAAAGTTATAAAAGAACTCGCAAAAGTTTTCCAAGTTTGGAAGTTCATCCAAGAACCAAGAGAG
* * *
21311 AAACAACTCTCACATACATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACT
582 AAACAACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAACT
21376 A
647 A
* * * * * * *
21377 TTAAGACGAAAAGAT-TCAATTTCCCAAGCATGTAATGTTAAAAAAATTGCT-GGAGGAAATGGA
1 TTTAGACCAAATGATGT-AATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGG-AATGGA
* * ** * *
21440 TTGTCTTGTTTACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTGAAGTTCGAAA
64 TCGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAA
** * * * *
21505 GTTTGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
129 GTTCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAA
* * * * * * *
21570 GTTGTTTACAAAATGACAAACCATTTAGACCAAATGTTGCGATTTCTCGAGCATGAAATGTTTTG
194 ATTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATG-TTCG
* * * ** * * * *
21635 -AAAACTGATCGAAGGAATGGATCGTCATGAATACTTTGTGGATCCGAAATTATAGAAGAACTCG
258 AAAAATTGCTCGAAGGAATGGTTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * ** * *
21699 TAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAAGCTCCAAGAGAGAAATAATTCTCATGTAAATAA
323 TAAAA-CTTCTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * *
21764 TTTTTTAATTTAAAGACCAAATGTT-TATTACCAAATGAAAAACTATTTAGAA-AAAATGATGCG
387 GTTTTTAATTCAAAGACCAAAAGTTGT-TTACAAAATGACAAACTATTTA-AACCAAATGACGCG
* *
21827 ATTTCCCAAGCAT-GAATGTTCAAAAAATTGCTTGAAGGAATGGATCGTCATGAATACTTTAAGG
450 ATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGG
* * *
21891 AACTGAAGTTATAAAAGAACTCGTAAAAGTTTTCCAAGTTTGGAAGTTCATCCAAGAACCAAGAT
515 AACTAAAGTTATAAAAGAACTCGCAAAAGTTTTCCAAGTTTGGAAGTTCATCCAAGAACCAAGAG
* * * * *
21956 AGAAATAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAAGTAGTTTAGAAAAAGAAAAA
580 AGAAACAACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAA
*
22021 TTA
645 CTA
* * *
22024 TTTAGACCAAATGATGTAATTTCCCGAGCAAGGAATGTTCAAAAAATTTCTCCAAGGAATGGATT
1 TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGA-T
* * * *
22089 C-TCCTGAATACTTTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAG
65 CGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG
* * * * **
22153 TTCATCTAAGAACCAAAAGAAAAACAACTCT-ACGTAAATAGGTTTTTAATTCAAAGATAAAAAA
130 TTCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAA
* * * **
22217 TTGTTTAGAAAATGAAAAACTATTTATACAAAATGATATGATTTCCCGAGCATGGAATGTTCGAA
195 TTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAA
* * * *
22282 AAATTGCTCAAAGGAATGGTTCGTCATGAATACTTTAAGGAAATGAAGTTTTAAAAGAACAT-GC
260 AAATTGCTCGAAGGAATGGTTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAAC-TCGT
* **
22346 AAAACTTCATCAAGTTCGAAAGTTCGTCTAAGAAGAAAGAGA-AAAGCAATTCTCACGTAAATAA
324 AAAACTTC-TCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAA
* * *
22410 GATTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAACGACGCGAT
387 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGACGCGAT
* * * *
22475 TTCTCGAGCACGGAATGTTCAGAAAATTGCTTGAAGGAATGTATTGTCATGAATACTTTAAGGAA
452 TTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAA
* * * * * ** *
22540 CAAAAGTTATAGATGGACTAGCAAAAGTTTTCCAAGTTCAGAAGTTTATCCAAGAACCAAGAGAG
517 CTAAAGTTATAAAAGAACTCGCAAAAGTTTTCCAAGTTTGGAAGTTCATCCAAGAACCAAGAGAG
** * * *
22605 AAACAACTCTCATGTAAATAATTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAAGT
582 AAACAACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAACT
22670 A
647 A
** * * *
22671 TTTAGACCAAATGATGCGATTTCCCGAGCATCGAATGTTCAAAAAAATGCTCTAAGGAATGGATC
1 TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATC
* ** ** * *
22736 GTAATGAATACTTTCTGGAATTGAAGTTATAAAAGAACTCGTAAAAGTTT-TCCAAGTTTGGAAG
66 GTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGT-CAAGTTCGGAAG
* * * * * * *
22800 TTCATACAAAAACCAAGATAGAAACAACTCGAAGGAAGTTCGTCCAAGAACAAAGAGAGAAACAA
130 TTCATCCAAGAACCAA-A-AGAGA-AA--C-----AA-CTC-T-CACG--TAAATA-AG------
** * *
22865 TTCTCACGTAAATAAGATTTTAATTTA-AAGACCAAAAGTTGTTTACAAAAGGACAAACTATTTA
173 TT-T----T---T-A-A-TTTAA---AGACCA-AAAA--TTGTTTACAAAATGACAAACTATTTA
* * * * * *
22929 GACCAAATGATACGATTT-CCGTGCATGGAATGTTTGGAAAATTGCTTGAAGGAATGGATT-GTC
221 GACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TTCGTC
* * * * * *
22992 ATGAATACTTTAAAGAAC-GAAAGTTATAGATGAACTGGTAAAAGTTTTCCAAGTTC-AGAAGTT
285 ATGAATACTTTAAGGAACTG-AAGTTATAAAAGAACTCGTAAAACTTCT-CAAGTTCGA-AAGTT
* *
23055 CGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAAGTT
347 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * *
23120 ATTTAGAAAATGACAAAGTATTTAGACCAAATGACACGATTTCCCGAGCATGGAATGTTCAAAAA
412 GTTTACAAAATGACAAACTATTTAAACCAAATGACGCGATTTCCCGAGCATGGAATGTTCAAAAA
* * * *
23185 ATTGCTCT-AAGGAATGGATTGTCTTGAATACTTTAA-TAAATCAAAGTTATAGAAGAACTCGCA
477 ATTGCT-TGAAGGAATGGATTGTCATGAATACTTTAAGGAACT-AAAGTTATAAAAGAACTCGCA
* * * *
23248 AAAGTATGT-CAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGG
540 AAAGT-TTTCCAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACATAAATAAG
* * **
23312 TTTTTAATTAAAAGACCAAAAGTTGTTTAGAAATTGGCAAACTA
604 TTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAACTA
* * *
23356 TTTAGA-CATAATGATGTGATTTCCCGTGCTTGGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
1 TTTAGACCA-AATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
* * * * * * * ** *
23420 CGTCATGAATACTTTAATGAACTGAAGTTTTAAAAGAACTCATAAAACTTCGTCTTGTTCAGAAG
65 CGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG
* * *
23485 TTCAACCAAGAA-CAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGACCAAAA
130 TTCATCCAAGAACCAAA-AGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAA
* * *
23549 GTTGTTTACAAAATGACAAACTATTTAGACTAAATTATGCGATTTCCCGAGCATGGAATGTTCGA
194 ATTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
* * * *
23614 AAAATTACTAGAAGGAATGGATT-GTCATGAATACTTTATGTAACTGAAGTTATAAAAGAACTCG
259 AAAATTGCTCGAAGGAATGG-TTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * ** * ** * ** **
23678 -AAGGATTGGA-TTGTCATGAATACTTTAATGAACCAAATTTATAGAA-CAACTG-GTAAA-AGA
323 TAA--A----ACTTCTCA--AGT--TCGAAAG-TTC--GTCCA-AGAACCAAGAGAG-AAACA-A
* * **** * * ** **
23738 TTCTGAAGTTCGCAAGTTTGTCCATGATCCAAGAGATAATAAATTCTCACGTAAATAAGTTTTTA
372 TTCTCACGTAAATAAGTTT-T---TAATTCAA-AG--ACCAAA-----A-GT---T--GTTTACA
* * * * * * *
23803 ATTCAATGACAAACTATTTAGACAAAATGATGTGATTTCTCAAGCATGAAATGTTCAAAAAATTG
419 A---AATGACAAACTATTTAAACCAAATGACGCGATTTCCCGAGCATGGAATGTTCAAAAAATTG
* * * * * * * *
23868 CTCGAAGGAATGCATCGTCATGAATTCTTT-AGAGAA-TCGAAGTTATAGAAGAATTTGTC-AAA
481 CTTGAAGGAATGGATTGTCATGAATACTTTAAG-GAACT-AAAGTTATAAAAGAACTCG-CAAAA
* * * * **
23930 GTTTGT-CAAGTTTAGAAGTTCATCCAATATCCAAGAGAGAAACAACTCTCACGTAAATAACATT
543 GTTT-TCCAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACATAAATAAGTTT
* * * * * *
23994 TTAATTTATAGACCAAAAACTTATTTACAAAATGACAAACTA
607 TTAATTCAAAGACC-AAAAGTTGTTTAGAAAATGAAAAACTA
* * * * * * *** *
24036 TTCAGACTAAATTATG-AGATTTTCGGAACATTGG-ATGTTTGGAAAATTACTCGAAGGAATGGA
1 TTTAGACCAAATGATGTA-ATTTCCCGAGCA-TGGAATGTTCAAAAAATTGCTCGAAGGAATGGA
* * * * * * * *
24099 TCATCATGAATAATTTATGGAACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGCCAAGTTCGAAA
64 TCGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAA
* * * *
24164 GTTCATCCAAGAACCCAGATAGAAATAACTCTCACGTAAATAAG---TT--TTT------C----
129 GTTCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAA
* * *
24214 A----TT-C---A--ACAAAGTATTTAGACTAAATTG-TGCGATTTCCCGAGCATGAAATGTTC-
194 ATTGTTTACAAAATGACAAACTATTTAGAC-AAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * *
24267 AGAAAATTGTTCGAAAGAATGGATCGTCATGAATACTTTACGGAACTGAAGTTATAAAAGAACTC
258 A-AAAATTGCTCGAAGGAATGGTTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* * * *
24332 TTAAAACTTCGTCAAGTTC-AGAAGTTCGTCTAAGAA-CAGAGTGAGAAACAACTCTCACGTAAA
322 GTAAAACTTC-TCAAGTTCGA-AAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAA
* * * * *
24395 TAACTTTTTAATTTATAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
384 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGACGC
*** * *
24460 GATTTCCCGAGCATGGAATGTTTGGAAAATTGCTTGAAGGAATGGATTGTCATGAATTCTTTAAA
449 GATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAG
* * * * * **
24525 GAACGAAAGTTATAGATGAACTGGTAAAAGTTTTCCAAGTTCAGAAGTT-AGTCCAAGAACCAAG
514 GAACTAAAGTTATAAAAGAACTCGCAAAAGTTTTCCAAGTTTGGAAGTTCA-TCCAAGAACCAAG
** * * *
24589 AGAGAAACAACTCTCATGTAAATAAGTTTTTCATTCAAAGACCAAAAGTTATTTAGAAAATGACA
578 AGAGAAACAACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAA
*
24654 AAGTA
643 AACTA
** * *
24659 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATT
1 TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATC
** * * * * *
24724 GTTTTGAATACTTTAAGAAATCAAAGTTATAGAAGAACTCGTAAAAGTATGTCAAGTTTGGAAGT
66 GTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGT
* * * * * * *
24789 TCGTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTCAAAGACCAAAAGT
131 TCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAAT
* * * *
24854 TGTTTAGAAAATGAAAAACTATTTTAGACAAAATGATGCGATTTCCCGTGCTTGGAATGTTCGAA
196 TGTTTACAAAATGACAAACTA-TTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAA
* * *
24919 AAATTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTA
260 AAATTGCTCGAAGGAATGGTTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTA
* ** * * * *
24984 AAACTTCATCATGTTC-AGAAGTTCAACCAACAACAAAGAGAGAAACAACTCTCACGTAAATAAC
325 AAACTTC-TCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
25048 TTTTTAATTTATAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGACTAAATTATGCGATT
388 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGACGCGATT
* * ** * * *
25113 TCCCGAGCATGGAATGTTCGAAAAATTACGAGAAGGAATGAATTGTCATGAATACTTTATGTAAC
453 TCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
* ** * * * * **
25178 TGAAGTTATAAAAGAACTCG-AAGGAATGGATTGTCATGAATACTTTAATGAACCAAATTTATAG
518 TAAAGTTATAAAAGAACTCGCAA--AA--G-TT-T--TCCA-A-GTT--TG---GAAGTTCATCC
* * * * * * * ** *
25242 AACAACTGGTAAAAGCTTGTGAAGTTCGCAACTTTGTC-CATGATCCAA-GAGATAATAAATTCT
568 AAGAAC-----CAAG--AGAGAA----ACAAC--TCTCACAT-A---AATAAG-TTTTTAATTC-
* * * *
25305 CACGTA--AATAAGTT-TTTA-ATTCAATGACAAACTA
614 AAAG-ACCAA-AAGTTGTTTAGA--AAATGAAAAACTA
* * * * * *
25339 TTTAGACAAAATGATGTGATTTCCCAAACATGAAATGTTCAAAAAATTGCTCGAAGGAATGCATC
1 TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATC
* * **
25404 GTCATTAATACTTT-AGAGAACCGAAGTTATAGAAGAACTCGTCAAAGTTTGTCAAGTTTAGAAG
66 GTCATGAATACTTTAAG-GAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG
* * * * ** *
25468 TTCATCCAATATCCAAGAGAGAAAAAACTCTCACGTAAATAACATTTTAATTTATAGACCAAAAA
130 TTCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAA
* * * * * * * ** *
25533 CTTGTTTACAAAATGAAAAACTATTCAGACTAAATTATGTGATTTTCAGAGCATTAAATGTTCGG
195 -TTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
* * * * *
25598 AAAATTACTCGAAGGAATGGATCATCATGAATAATTT-ATGATACTGAAGTTATAAAAGAACTCG
259 AAAATTGCTCGAAGGAATGGTTCGTCATGAATACTTTAAGGA-ACTGAAGTTATAAAAGAACTCG
* * * * * * *
25662 TAAAAGTT-TGCTAAGCTCGGAAGTTCATCCAAGAACCAAGATAGAAATAACTCTCACGTAAATA
323 TAAAACTTCT-C-AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
25726 AGTTTTTCATTCAAAGTCCAAAAGTAGTTTAGAAAATGAC-AA--A-TT-------AT---GCGA
386 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGACGCGA
* * *
25777 TTTCTCGAGCATGGAATGTTCAAAAAATTGCACT-AAGGAATGGATTGTTC-TGAATACTATAAG
451 TTTCCCGAGCATGGAATGTTCAAAAAATTGC-TTGAAGGAATGGATTG-TCATGAATACTTTAAG
* ** * ** * * *
25840 AAACCGATGTTATTGAAGAACTCGTAAAAGTTTGT-CAAGTTTGGAAGTTCTTCTAAGAACCAAG
514 GAACTAAAGTTATAAAAGAACTCGCAAAAGTTT-TCCAAGTTTGGAAGTTCATCCAAGAACCAAG
* * * * ** * *
25904 AGAAAAACAACTCTCACGTAAATAGGTTTCTAATTCAAAGATAAAAAGTTGTTCAGAAAATGACA
578 AGAGAAACAACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAA
25969 AACTA
643 AACTA
* ** * ** *
25974 TTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATC
1 TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATC
* * * * * * * ** * *
26039 ATCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATCAAGTTTGAAAGT
66 GTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGT
** * *
26104 TTGTCCAAGAA-CATACAGAGAAACAATTCTCACGTAAATAA-TATTTTAATTTAAAGACCAAAA
131 TCATCCAAGAACCA-AAAGAGAAACAACTCTCACGTAAATAAGT-TTTTAATTTAAAGACCAAAA
* * * * * *
26167 GTTGTTTACAAAATGACAAACTATTTAGACTAAATTATTCGAATTCCCGAGCATGGAATG-TCAA
194 ATTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
* * ** ** * * * *
26231 AAAATTACTCGAAGGAATGGGTT-GTCATGAACACTTTATTGAACCAAAGTTATAGAACAATTGG
259 AAAATTGCTCGAAGGAAT-GGTTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * * * * * *
26295 TAAAAGTTTGTGAAGTTC-AGAAGTTTGTCCATGATCCAAGAGATAATA-AATTCTCACATAAAT
323 TAAAA-CTTCTCAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAA-ACAATTCTCACGTAAAT
* * * * ** * * *
26358 AAGTTTTTAATTCAATGACCAAAAGTTGTATACCAAATGACAAAATATTTTGACAAAATGATGTG
385 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGACGCG
* * * * * * *
26423 ATTTCCCAAGCAAGGAATGTTCAGAAAATTGCTCGAAGGAATGCATCGTCATGAATACTTTAAAG
450 ATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGG
** * * * * *
26488 AACCGAAGTTATAGAAGAACTCGTC-AATGTTTGT-CAAGTTTAGAAGTTCATCCAATATCCAAG
515 AACTAAAGTTATAAAAGAACTCG-CAAAAGTTT-TCCAAGTTTGGAAGTTCATCCAAGAACCAAG
* ** * * ** *
26551 AGAGAAACAATTCTCATGTCAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTACCAAATGACA
578 AGAGAAACAACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAA
26616 AA-TA
643 AACTA
** * *** * * *
26620 GTTTAGAGAAAATTATACGATTTCCCAAGCATGAAATGTTCAAAAAATTGCTTGAAGGAATGGAT
1 -TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
* * * * * * * * * *
26685 CATTATGAATACTTTACGAAACTGAAGTTATAAAAGAACTTGTAAAATTTTGCCAAGTTCAGAAG
65 CGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG
* * * * *
26750 TTCATCCAAGAACCAAGATAGAAACAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAAG
130 TTCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAA
* * * * * ** *
26815 TAGTTTAGAAAAGGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCATAAAATGTTCAAA
195 TTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAA
* * * * * ** *
26880 AAATTTCTCTAAAGAATGGATT-GTCCTGAATACTTTAAGAAACTGAAGTTATTGAAGAACTTGT
260 AAATTGCTCGAAGGAATGG-TTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * * * * * * * * *
26944 AAAATTTTGTCTAGTTTGGAAGTGCATCTAAGAACCAAGAGAAAAATAACTCTCACGTAAATAGG
324 AAAA-CTTCTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
** * * *
27009 TTTTTAATTCAAAGATAAAAAGTTGTTTAGAAAATGACAAACTATTTATA-CAAAGTGATGCGAT
388 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAA-TGACGCGAT
* * * * * * *
27073 TTCCTGTGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTTCAAGGAG
452 TTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAA
* * *** * ** * *
27138 CTGAAGTTTTAAAAGAACTTTAAAAACATCAT-CAA-TTTCGGAAGTTCGTCCAAGAACAAAGAG
517 CTAAAGTTATAAAAGAACTCGCAAAA-GTTTTCCAAGTTT-GGAAGTTCATCCAAGAACCAAGAG
* * * * * *
27201 AGAAACAATTCTCA-AGTAAA-AAGATTTTAATTTAAAGAACAAAAGTTGTTTACG-AATTGACA
580 AGAAACAACTCTCACA-TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-GAAAATGAAA
27263 AACTA
643 AACTA
* * *** * *
27268 TTTAGACCAAATGATGTTATTTCCCGAGCATGGAACGTTTGGAAAATTGCTTGAAGGAATGGATT
1 TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATC
* * * *
27333 GTCATGAATACTTTAAGGAA-CGAAAGTTATAGATGAACTGGTAAAAGATTT-CCAAGTTCAGAA
66 GTCATGAATACTTTAAGGAACCG-AAGTTATAGAAGAACTCGTAAAAG-TTTGTCAAGTTCGGAA
** * * * * *
27396 GTTTGTCCAAGAGCCAAGAGAGAAATAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAA
129 GTTCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAA
* * * * * *
27461 GTTGTTTAGAAAATGACAAAGTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCAA
194 ATTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
** * * * * * *
27526 AAAATAACTCTAAGGAATAGATT-GTCTTGAATACTTTAA-GAAATCAAAGTTATAGAAGAACTC
259 AAAATTGCTCGAAGGAAT-GGTTCGTCATGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTC
* * * * * * * * *
27589 GTAAAAGTATGTCAAGTTTGGAAGTTCGTCTAAGAATCAAAAGAGAAACAACTCTCACATAAATA
322 GTAAAACT-TCTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
27654 GGTTTTTATTTCAAAGACCAAAAGTTTTTTAGAAAATGACAAACTATTTAGA-CATAATGATGCG
386 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCA-AATGACGCG
* * * * **
27718 ATTT-CCTATGCTTGGAATGTTCGAAAAATTGCTCGAAGGAAACG-TTCGTCATGAATACTTTAA
450 ATTTCCCGA-GCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATT-GTCATGAATACTTTAA
* * * ** * * * * * *
27781 GGAATTGAAGTTTTAAAAGAACTCATAAAACTTCGT-CAAGTTCGTAAGTTCGTCCAAGAACAAA
513 GGAACTAAAGTTATAAAAGAACTCGCAAAAGTT-TTCCAAGTTTGGAAGTTCATCCAAGAACCAA
* * * * *
27845 GAGAGAAACAACTCTCACTTAAATAACTTTTTAATTTATAGACCAAAAGTTGTTTACAAAATGTG
577 GAGAGAAACAACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAA----
*
27910 TTCGAAAAATTA
638 -T-GAAAAACTA
* * *** *** * * ***
27922 -CTCGAAGGAATGGATTGTCATGACTACTTTATGTAAC-T-GAA-GTT-ATAAAAGAACTCGAAG
1 TTTAGACCAAAT-GA-TGT-A--A-T--TTCCCG-AGCATGGAATGTTCAAAAAATTGCTCGAAG
* * * * * * *
27982 GAATGGATTGTCATGAATACTTTAATGAACCAAATTTATAGAACAACTGGTAAAAGTTTGTGAAG
57 GAATGGATCGTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAG
** ** * * * * * *
28047 TTCGGAAGTTTGTCCATCATCCAAAAGATAATA-AATTCTCATGTAAATAAGTTTTTAATTCAAT
122 TTCGGAAGTTCATCCAAGAACCAAAAGAGAA-ACAACTCTCACGTAAATAAGTTTTTAATTTAAA
* * * * * * *
28111 GACCAAAAGTTATTTAGAAAATGACAAAGTATTTAGACCAAATGACGTGATTTCCCGAGCATGGA
186 GACCAAAAATTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGA
** * * * *
28176 ATGTTTAAAAAATTGCTCTAAGGAATGGATT-GTCTTGAATACTTTAA-GAAATCGAAGTTATAG
251 ATGTTCGAAAAATTGCTCGAAGGAATGG-TTCGTCATGAATACTTTAAGGAACT-GAAGTTATAA
* * * * * *
28239 AAGAACTCGTAAAAGTATGTCAAGTTTGGAAGTT-GTCTAAGAACCAAGAGAGAAACAACTCTCA
314 AAGAACTCGTAAAACT-TCTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
28303 CATAAATAGGTTTTTAATTCGAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTA
378 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTA
28361 GACATAATGA
Statistics
Matches: 5637, Mismatches: 1053, Indels: 579
0.78 0.14 0.08
Matches are distributed among these distances:
622 3 0.00
623 158 0.03
624 166 0.03
625 1 0.00
626 2 0.00
627 6 0.00
628 2 0.00
629 1 0.00
632 2 0.00
633 125 0.02
634 65 0.01
635 175 0.03
636 16 0.00
637 4 0.00
638 4 0.00
639 4 0.00
640 4 0.00
641 8 0.00
642 2 0.00
644 9 0.00
645 34 0.01
646 253 0.04
647 1528 0.27
648 765 0.14
649 293 0.05
650 11 0.00
651 4 0.00
652 22 0.00
653 13 0.00
654 14 0.00
655 102 0.02
656 9 0.00
657 95 0.02
658 294 0.05
659 13 0.00
660 5 0.00
661 9 0.00
662 11 0.00
663 19 0.00
664 2 0.00
665 6 0.00
666 74 0.01
667 4 0.00
668 3 0.00
669 4 0.00
670 11 0.00
671 3 0.00
672 3 0.00
673 1 0.00
674 7 0.00
675 7 0.00
676 11 0.00
677 3 0.00
678 7 0.00
679 185 0.03
680 505 0.09
681 32 0.01
682 2 0.00
683 7 0.00
684 15 0.00
685 447 0.08
686 47 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (647 bp):
TTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATC
GTCATGAATACTTTAAGGAACCGAAGTTATAGAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGT
TCATCCAAGAACCAAAAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAAT
TGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA
AATTGCTCGAAGGAATGGTTCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAA
AACTTCTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGACGCGATTTCC
CGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAACTAA
AGTTATAAAAGAACTCGCAAAAGTTTTCCAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAAC
AACTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAACTA
Found at i:23143 original size:19 final size:21
Alignment explanation
Indices: 23114--23155 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 21
23104 TCAAAGACCA
23114 AAAGTTATTTAGA-AAATGAC
1 AAAGTTATTTAGACAAATGAC
23134 AAAG-TATTTAGACCAAATGAC
1 AAAGTTATTTAGA-CAAATGAC
23155 A
1 A
23156 CGATTTCCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 4 0.20
21 8 0.40
ACGTcount: A:0.50, C:0.10, G:0.14, T:0.26
Consensus pattern (21 bp):
AAAGTTATTTAGACAAATGAC
Found at i:23672 original size:901 final size:890
Alignment explanation
Indices: 21932--27907 Score: 4049
Period size: 863 Copynumber: 6.8 Consensus size: 890
21922 TTCCAAGTTT
* * * * *
21932 GGAAGTTCATCCAAGAACCAAGATAGAAATAACTCTCACGTAAATAAGTTTTTCATTCAAAGACC
1 GGAAGTTCGTCCAAGAACCAAGAGAGAAA-AATTCTCACGTAAATAAG---TTAATTTAAAGA-C
* * * ** *
21997 AAAAGTAGTTTAGAAAAAGAAAAATTATTTAGACCAAATGATGTAATTTCCCGAGCAAGGAATGT
61 -AAAGT-GTTT----CAAGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
22062 TCAAAAAATTTCTCCAAGGAATGGATTCTCCTGAATACTTTAAGAAACCGAAGTTATTGAAGAAC
120 TCAAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGAAATCGAAGTTATAGAAGAAC
* * * *
22127 TCGTAAAAGTTTGTCAAGTTTGGAAGTTCATCTAAGAACCAAAAGAAAAACAACTCT-ACGTAAA
185 TCGTAAAAGTTTGTCAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAA
* ** * * * *
22191 TAGGTTTTTAATTCAAAGATAAAAAATTGTTTAGAAAATGAAAAACTATTTATACAAAATGATAT
250 TAAGTTTTTAATTCAAAGACCAAAAGTTATTTAGAAAATGAAAAACTATTTAGACAAAATGATAC
*
22256 GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGTTCGTCATGAATACTTTAAG
315 GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTAA-
* * *
22321 GAAA-TGAAGTTTTAAAAGAACAT-GCAAAACTTCATCAAGTTCGAAAGTTCGTCTAAGAAGAAA
379 GAAACTGAAGTTTTAAAAGAAC-TCGCAAAACTTCATCAAGTTCGAAAGTTCATCCAAGAACAAA
* *
22384 GAGA-AAAGCAATTCTCACGTAAATAAGATTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGA
443 GAGAGAAA-CAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * * *
22448 CAAACTATTTAAACCA-AACGACGCGATTTCTCGAGCACGGAATGTTCAGAAAATTGCTTGAAGG
507 CAAACTATTTAGA-CATAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGG
* * ** * * * * * *
22512 AATGTATTGTCATGAATACTTTAAGGAACAAAAGTTATAGATGGACT-AGCAAAAGTT-TTCCAA
571 AATGGATCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCA-TAAAACTTCGT-CAA
* * * * * * *
22575 GTTCAGAAGTTTATCCAAGAACCAAGAGAGAAACAACTCTCATGTAAATAATTTTTTCATTCAAA
634 GTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATA
* * * *
22640 GACCAAAAGTTGTTTAGAAAATGAAAAAGTATTTAGACCAAATGATGCGATTTCCCGAGCATCGA
699 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * ** * * * *
22705 ATGTTCAAAAAAATGCTCTAAGGAATGGATCGTAATGAATACTTTCTGGAATTGAAGTTATAAAA
764 ATGTTCGAAAAATTGCTAGAAGGAATGGATTGTCATGAATACTTTAT-GAACTGAAGTTATAAAA
22770 GAACTCGTAAAAGTTTTCCAAGTTTGGAAGTTCATACAAAAACCAAGATAGAAACAACTC-GAA
828 GAACTCGTAAAAGTTTTCCAAGTTTGGAAGTT-ATACAAAAACCAAGATAGAAACAACTCTGAA
*
22833 GGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTTAAAGACC
1 GGAAGTTCGTCCAAGAACCAAGAGAGAAA-AATTCTCACGTAAATAAG---TTAATTTAAAGA-C
* *
22898 AAAAGTTGTTTACAAAAGGACAAACTATTTAGACCAAATGATACGATTT-CCGTGCATGGAATGT
61 -AAAG-TGTTT-C--AA-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
*** * *
22962 TTGGAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAA-AGAA-CGAAAGTTATAGATGA
120 TCAAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGA-AATCG-AAGTTATAGAAGA
* * *
23025 ACTGGTAAAAGTTT-TCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGT
183 ACTCGTAAAAGTTTGT-CAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGT
* * * *
23089 AAATAAGTTTTTCATTCAAAGACCAAAAGTTATTTAGAAAATGACAAAGTATTTAGACCAAATGA
247 AAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTAGAAAATGAAAAACTATTTAGACAAAATGA
* * * * *
23154 CACGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCTTGAATACTTT
312 TACGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTT
* * * * * * * * * *
23219 AATAAA-TCAAAGTTATAGAAGAACTCGCAAAAGTAT-GTCAAGTTTGGAAGTTCGTCTAAGAAC
377 AAGAAACT-GAAGTTTTAAAAGAACTCGCAAAACT-TCATCAAGTTCGAAAGTTCATCCAAGAAC
* * * * * *
23282 CAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTAAAAGACCAAAAGTTGTTTAGAAATT
440 AAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAAT
* * * *
23347 GGCAAACTATTTAGACATAATGATGTGATTTCCCGTGCTTGGAATGTTCAAAAAATTGCTCGAAG
505 GACAAACTATTTAGACATAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * **
23412 GAATGGATCGTCATGAATACTTTAATGAACTGAAGTTTTAAAAGAACTCATAAAACTTCGTCTTG
570 GAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAACTTCGTCAAG
*
23477 TTCAGAAGTTCAACCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAG
635 TTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAG
* *
23542 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACTAAATTATGCGATTTCCCGAGCATGGAA
700 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
*
23607 TGTTCGAAAAATTACTAGAAGGAATGGATTGTCATGAATACTTTATGTAACTGAAGTTATAAAAG
765 TGTTCGAAAAATTGCTAGAAGGAATGGATTGTCATGAATACTTTATG-AACTGAAGTTATAAAAG
* ** * * * * * * *
23672 AACTCG-AAGGATTGGATTGTCATGAATACTTTAATGAACCAAATTTATAGAACAA-C-TGGTA-
829 AACTCGTAA--A--AG-TT-T--TCCA-A-GTT--TG----GAAGTTATACAAAAACCAAGATAG
* *
23733 AAA-GATTCTGAA
878 AAACAACTCTGAA
* * * *
23745 GTTCGCAAGTTTGTCCATGATCCAAGAGATAATAAATTCTCACGTAAATAAGTT--TTT------
1 G---G-AAGTTCGTCCAAGAACCAAGAGAGAA-AAATTCTCACGTAAATAAGTTAATTTAAAGAC
* * * * *
23802 -AA----TTCAATGACAAACTATTTAGACAAAATGATGTGATTTCTCAAGCATGAAATGTTCAAA
61 AAAGTGTTTCAA-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * * * *
23862 AAATTGCTCGAAGGAATGCATCGTCATGAATTCTTT-AGAGAATCGAAGTTATAGAAGAATTTGT
125 AAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGA-AATCGAAGTTATAGAAGAACTCGT
* * * *
23926 CAAAGTTTGTCAAGTTTAGAAGTTCATCCAATATCCAAGAGAGAAACAACTCTCACGTAAATAAC
189 AAAAGTTTGTCAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAG
* * * * * * * * *
23991 ATTTTAATTTATAGACCAAAAACTTATTTACAAAATGACAAACTATTCAGACTAAATTATGA-GA
254 TTTTTAATTCAAAGACC-AAAAGTTATTTAGAAAATGAAAAACTATTTAGACAAAATGAT-ACGA
* * * * * * * * * * *
24055 TTTTCGGAACATTGG-ATGTTTGGAAAATTACTCGAAGGAATGGATCATCATGAATAATTTATGG
317 TTTCCCGAGCA-TGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGA
* * *** ** *
24119 AACTGAAGTTTTAAAAGAACTCGTAAAAGTTTGCCAAGTTCGAAAGTTCATCCAAGAACCCAGAT
381 AACTGAAGTTTTAAAAGAACTCGCAAAACTTCATCAAGTTCGAAAGTTCATCCAAGAACAAAGAG
* * * *
24184 AGAAATAACTCTCACGTAAATAAGTTTTTCA-TT-CA-A-C-AAAG-TATTT-----A-G----A
446 AGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * *
24233 C----TA-A-AT--TG-TGCGATTTCCCGAGCATGAAATGTTCAGAAAATTGTTCGAAAGAATGG
511 CTATTTAGACATAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGG
* *
24289 ATCGTCATGAATACTTTACGGAACTGAAGTTATAAAAGAACTCTTAAAACTTCGTCAAGTTCAGA
576 ATCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAACTTCGTCAAGTTCAGA
* * * *
24354 AGTTCGTCTAAGAACAGAGTGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGACCAAA
641 AGTTCATCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGACCAAA
*
24419 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTG
706 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * * * *
24484 GAAAATTGCTTGAAGGAATGGATTGTCATGAATTCTTTAAAGAAC-GAAAGTTATAGATGAACTG
771 AAAAATTGCTAGAAGGAATGGATTGTCATGAATACTTT-ATGAACTG-AAGTTATAAAAGAACTC
** * * * * *
24548 GTAAAAGTTTTCCAAGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCAT
834 GTAAAAGTTTTCCAAGTTTGGAAGTTA-TACAAAAACCAAGATAGAAACAACTCTGAA
* * ** ***** **
24606 GTAAATAAGTTTTTCATTC-A-A-AG----A----C-C---AA-AAGTT-ATTT--AGA-AAA--
1 GGAAGTTCGTCCAAGAACCAAGAGAGAAAAATTCTCACGTAAATAAGTTAATTTAAAGACAAAGT
*
24649 ---T---GACAAAGTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTG
66 GTTTCAAGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTG
* ** * *
24708 CTCTAAGGAATGGATTGTTTTGAATACTTTAAGAAATCAAAGTTATAGAAGAACTCGTAAAAGTA
131 CTCGAAGGAATGGATTGTCATGAATACTTTAAGAAATCGAAGTTATAGAAGAACTCGTAAAAGTT
* * * * *
24773 TGTCAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAA
196 TGTCAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAA
* * *
24838 TTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAACTATTTTAGACAAAATGATGCGATTTCCCGT
261 TTCAAAGACCAAAAGTTATTTAGAAAATGAAAAACTA-TTTAGACAAAATGATACGATTTCCCGA
* *
24903 GCTTGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGT
325 GCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGAAACTGAAGT
* * * *
24968 TTTAAAAGAACTCGTAAAACTTCATCATGTTC-AGAAGTTCAACCAACAACAAAGAGAGAAACAA
390 TTTAAAAGAACTCGCAAAACTTCATCAAGTTCGA-AAGTTCATCCAAGAACAAAGAGAGAAACAA
* * *
25032 CTCTCACGTAAATAACTTTTTAATTTATAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAG
454 CTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * * ** * *
25097 AC-TAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACGAGAAGGAATGAATTGTCA
519 ACAT-AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCA
* * * * * * *
25161 TGAATACTTTATGTAACTGAAGTTATAAAAGAACTCGA-AGGAATGGATTGTCATGAATACTTTA
583 TGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC-ATA--AA---ACT-TCGT-CA-A-GTTC
* * ** * * * * * * *
25225 ATGAACCAAATTTATAGAACAACTGGTAAAAGCTTGTGAAGTTCGCAACTTTGTCCATGATCCAA
638 A-G----AAGTTCATCCAAGAAC-----AAAG--AGAGAA----ACAAC--TCT-CACG-T-AAA
* ** * * * *
25290 GAGA-TAATAAATTCTCACGTA-A--ATAAGTT-TTTA-ATTCAATGACAAACTATTTAGACAAA
682 TA-ACTTTTTAATT-T-A--TAGACCAAAAGTTGTTTACA--AAATGACAAACTATTTAGACCAA
* * * * * * * * *
25349 ATGATGTGATTTCCCAAACATGAAATGTTCAAAAAATTGCTCGAAGGAATGCATCGTCATTAATA
740 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATTGTCATGAATA
* * * * * * *
25414 CTTTAGAGAACCGAAGTTATAGAAGAACTCGTCAAAGTTTGT-CAAGTTTAGAAGTTCATCCAAT
805 CTTTA-TGAACTGAAGTTATAAAAGAACTCGTAAAAGTTT-TCCAAGTTTGGAAGTT-ATACAAA
* * *
25478 ATCCAAGAGAGAAAAAACTCT---
867 AACCAAGATAGAAACAACTCTGAA
* * * **** * * * * * * *
25499 --CA---CGT---A-AA-TAACA-TTTTAATTTATAGAC-CAAA-AACTT-GTTT----ACAAAA
1 GGAAGTTCGTCCAAGAACCAAGAGAGAAAAATTCT-CACGTAAATAAGTTAATTTAAAGACAAAG
* * * * * * ** **
25546 TG-----A-A-AAACTATTCAGACTAAATTATGTGATTTTCAGAGCATTAAATGTTCGGAAAATT
65 TGTTTCAAGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATT
* ** * * * *
25604 ACTCGAAGGAATGGATCATCATGAATAATTTATGATA-CTGAAGTTATAAAAGAACTCGTAAAAG
130 GCTCGAAGGAATGGATTGTCATGAATACTTTAAGAAATC-GAAGTTATAGAAGAACTCGTAAAAG
* ** * *
25668 TTTG-CTAAGCTCGGAAGTTCATCCAAGAACCAAGATAGAAATAACTCTCACGTAAATAAGTTTT
194 TTTGTC-AAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTT
* * * *
25732 TCATTCAAAGTCCAAAAG-TAGTTTAGAAAATG-ACAA--A-TT-------ATG---CGATTTCT
258 TAATTCAAAGACCAAAAGTTA-TTTAGAAAATGAAAAACTATTTAGACAAAATGATACGATTTCC
* * * * * *
25782 CGAGCATGGAATGTTCAAAAAATTGCACTAAGGAATGGATTGTTC-TGAATACTATAAGAAACCG
322 CGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCG-TCATGAATACTTTAAGAAACTG
* * * * ** * * * * * *
25846 ATGTTATT-GAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAGTTCTTCTAAGAACCAAGAGAAAA
386 AAGTT-TTAAAAGAACTCGCAAAACTTCATCAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAA
* * * ** * *
25910 ACAACTCTCACGTAAATAGGTTTCTAATTCAAAGATAAAAAGTTGTTCAGAAAATGACAAACTAT
450 ACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * ** * *
25975 TTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCA
515 TTAGACATAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCG
* *** * *
26040 TCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATCAAGTT-TGAAAGT
580 TCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAACTTCGTCAAGTTCAG-AAGT
** * * * *
26104 TTGTCCAAGAACATACAGAGAAACAATTCTCACGTAAATAA-TATTTTAATTTAAAGACCAAAAG
644 TCATCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACT-TTTTAATTTATAGACCAAAAG
* * * * *
26168 TTGTTTACAAAATGACAAACTATTTAGACTAAATTATTCGAATTCCCGAGCATGGAATG-TCAAA
708 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAA
* * * * ** * * * *
26232 AAATTACTCGAAGGAATGGGTTGTCATGAACACTTTATTGAACCAAAGTTATAGAACAATTGGTA
773 AAATTGCTAGAAGGAATGGATTGTCATGAATACTTTA-TGAACTGAAGTTATAAAAGAACTCGTA
26297 AAAG-TTT----G--T-GAAG-T-T--------C-AGA-AG---------T---
837 AAAGTTTTCCAAGTTTGGAAGTTATACAAAAACCAAGATAGAAACAACTCTGAA
* * * * * *
26319 -----TT-GTCCATGATCCAAGAGATAATAAATTCTCACATAAATAAGTTTTTAATTCAATGACC
1 GGAAGTTCGTCCAAGAACCAAGAGAGAA-AAATTCTCACGTAAATAAG---TTAATTTAAAGA-C
* * * * * * *
26378 AAAAGTTGTATACCAAATGACAAAATATTTTGACAAAATGATGTGATTTCCCAAGCAAGGAATGT
61 -AAAG-TGT-T-TC-AA-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * *
26443 TCAGAAAATTGCTCGAAGGAATGCATCGTCATGAATACTTTAA-AGAACCGAAGTTATAGAAGAA
120 TCAAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGA-AATCGAAGTTATAGAAGAA
* * * * * * *
26507 CTCGTCAATGTTTGTCAAGTTTAGAAGTTCATCCAATATCCAAGAGAGAAACAATTCTCATGTCA
184 CTCGTAAAAGTTTGTCAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAA
* * ** * * *
26572 ATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTACCAAATGACAAA-TAGTTTAGAGAAAATTAT
249 ATAAGTTTTTAATTCAAAGACCAAAAGTTATTTAGAAAATGAAAAACTA-TTTAGACAAAATGAT
* * * ** * *
26636 ACGATTTCCCAAGCATGAAATGTTCAAAAAATTGCTTGAAGGAATGGATCATTATGAATACTTTA
313 ACGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTA
* * * * * *** *
26701 CGAAACTGAAGTTATAAAAGAACTTGTAAAATTTTGCCAAGTTC-AGAAGTTCATCCAAGAACCA
378 AGAAACTGAAGTTTTAAAAGAACTCGCAAAACTTCATCAAGTTCGA-AAGTTCATCCAAGAACAA
* * * * * *
26765 AGATAGAAACAACTCTCACGTAAATAAGTTTTTCATTCAAAGACCAAAAGTAGTTTAGAAAAGGA
442 AGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGA
* ** * * *
26830 CAAATTATTTAGACCA-AATGATGCGATTTCCCGAGCATAAAATGTTCAAAAAATTTCTCTAAAG
507 CAAACTATTTAGA-CATAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGG
* * * ** ** * * *
26894 AATGGATTGTCCTGAATACTTTAAGAAACTGAAGTTATTGAAGAACTTGTAAAATTTTGTCTAGT
571 AATGGATCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAACTTCGTCAAGT
** * * * * * ** * *
26959 TTGGAAGTGCATCTAAGAACCAAGAGAAAAATAACTCTCACGTAAATAGGTTTTTAATTCAAAGA
636 TCAGAAGTTCATCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGA
** * * * *
27024 TAAAAAGTTGTTTAGAAAATGACAAACTATTTATA-CAAAGTGATGCGATTTCCTGTGCATGGAA
701 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAA
* *
27088 TGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATAC--T-T---C--AAG--------GA
765 TGTTCGAAAAATTGCTAGAAGGAATGGATTGTCATGAATACTTTATGAACTGAAGTTATAAAAGA
* ** * * * **
27137 GCT-G---AAGTTTT--AA---AAGAACTT-T--AAAAA-C---AT--CATCAA-T-T-TC
830 ACTCGTAAAAGTTTTCCAAGTTTGGAAGTTATACAAAAACCAAGATAGAAACAACTCTGAA
* *
27177 GGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAAGTAAA-AAGATTTTAATTTAAAGAAC
1 GGAAGTTCGTCCAAGAACCAAGAGAGAAA-AATTCTCACGTAAATAAG---TTAATTTAAAG-AC
** *
27241 AAAAGTTGTTTACGAATTGACAAACTATTTAGACCAAATGATGTTATTTCCCGAGCATGGAACGT
61 -AAAG-TGTTT-C-AA--GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
*** * * *
27306 TTGGAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAA-CGAAAGTTATAGATGAA
120 TCAAAAAATTGCTCGAAGGAATGGATTGTCATGAATACTTTAAGAAATCG-AAGTTATAGAAGAA
* * * ** * *
27370 CTGGTAAAAGATTT-CCAAGTTCAGAAGTTTGTCCAAGAGCCAAGAGAGAAATAACTCTCACGTA
184 CTCGTAAAAG-TTTGTCAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTA
* * * * *
27434 AATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAAGTATTTAGACCAAATGAT
248 AATAAGTTTTTAATTCAAAGACCAAAAGTTATTTAGAAAATGAAAAACTATTTAGACAAAATGAT
* * * ** * * * *
27499 GCGATTTCCCTAGCATGGAATGTTCAAAAAATAACTCTAAGGAATAGATTGTCTTGAATACTTTA
313 ACGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTA
* * * * * * * * * *
27564 AGAAA-TCAAAGTTATAGAAGAACTCGTAAAAGTAT-GTCAAGTTTGGAAGTTCGTCTAAGAATC
378 AGAAACT-GAAGTTTTAAAAGAACTCGCAAAACT-TCATCAAGTTCGAAAGTTCATCCAAGAA-C
* * * *
27627 AAA-AGAGAAACAACTCTCACATAAATAGGTTTTT-ATTTCAAAGACCAAAAGTTTTTTAGAAAA
440 AAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAATTT-AAAGACCAAAAGTTGTTTACAAAA
* * *
27690 TGACAAACTATTTAGACATAATGATGCGATTT-CCTATGCTTGGAATGTTCGAAAAATTGCTCGA
504 TGACAAACTATTTAGACATAATGATGCGATTTCCCGA-GCATGGAATGTTCAAAAAATTGCTCGA
** * * *
27754 AGGAAACGTTCGTCATGAATACTTTAAGGAATTGAAGTTTTAAAAGAACTCATAAAACTTCGTCA
568 AGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAACTTCGTCA
* *
27819 AGTTC-GTAAGTTCGTCCAAGAACAAAGAGAGAAACAACTCTCACTTAAATAACTTTTTAATTTA
633 AGTTCAG-AAGTTCATCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTA
27883 TAGACCAAAAGTTGTTTACAAAATG
697 TAGACCAAAAGTTGTTTACAAAATG
27908 TGTTCGAAAA
Statistics
Matches: 4039, Mismatches: 769, Indels: 572
0.75 0.14 0.11
Matches are distributed among these distances:
819 2 0.00
820 1 0.00
823 1 0.00
824 3 0.00
825 3 0.00
826 8 0.00
827 2 0.00
829 2 0.00
830 5 0.00
831 3 0.00
835 1 0.00
836 1 0.00
837 3 0.00
838 2 0.00
839 28 0.01
840 314 0.08
841 11 0.00
842 5 0.00
843 5 0.00
844 5 0.00
845 8 0.00
846 9 0.00
847 4 0.00
848 4 0.00
849 175 0.04
850 68 0.02
851 52 0.01
852 14 0.00
853 4 0.00
854 4 0.00
855 6 0.00
856 9 0.00
857 18 0.00
858 1 0.00
859 2 0.00
860 8 0.00
861 12 0.00
862 24 0.01
863 907 0.22
864 78 0.02
865 80 0.02
866 1 0.00
867 4 0.00
868 12 0.00
870 4 0.00
871 278 0.07
872 7 0.00
873 3 0.00
874 6 0.00
875 3 0.00
876 6 0.00
877 2 0.00
879 10 0.00
880 4 0.00
882 253 0.06
883 4 0.00
884 6 0.00
885 4 0.00
886 5 0.00
888 2 0.00
890 8 0.00
891 5 0.00
892 5 0.00
893 4 0.00
894 35 0.01
895 153 0.04
896 324 0.08
897 194 0.05
898 3 0.00
899 6 0.00
900 123 0.03
901 581 0.14
902 10 0.00
904 1 0.00
905 2 0.00
906 1 0.00
908 2 0.00
909 1 0.00
910 2 0.00
911 6 0.00
912 9 0.00
913 5 0.00
914 1 0.00
915 8 0.00
916 43 0.01
917 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (890 bp):
GGAAGTTCGTCCAAGAACCAAGAGAGAAAAATTCTCACGTAAATAAGTTAATTTAAAGACAAAGT
GTTTCAAGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTG
CTCGAAGGAATGGATTGTCATGAATACTTTAAGAAATCGAAGTTATAGAAGAACTCGTAAAAGTT
TGTCAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAA
TTCAAAGACCAAAAGTTATTTAGAAAATGAAAAACTATTTAGACAAAATGATACGATTTCCCGAG
CATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGAAACTGAAGTT
TTAAAAGAACTCGCAAAACTTCATCAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAACT
CTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
ATAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCATGA
ATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAACTTCGTCAAGTTCAGAAGTTCATCCA
AGAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATAGACCAAAAGTTGTTTAC
AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT
AGAAGGAATGGATTGTCATGAATACTTTATGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTTC
CAAGTTTGGAAGTTATACAAAAACCAAGATAGAAACAACTCTGAA
Found at i:24599 original size:216 final size:216
Alignment explanation
Indices: 24219--28372 Score: 2896
Period size: 216 Copynumber: 19.1 Consensus size: 216
24209 TTTTCATTCA
* * *
24219 ACAAAGTATTTAGACTAAATTG-TGCGATTTCCCGAGCATGAAATGTTC-AGAAAATTG-TTCGA
1 ACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTT-GA
* * ** *
24281 AAGAATGGATCGTCATGAATACTTTACGGAACTGAAGTTATAAAAGAACTCTTAAAACTTCGTCA
63 AGGAATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCA
* * * *
24346 AGTTCAGAAGTTCGTCTAAGAA-CAGAGTGAGAAACAACTCTCACGTAAATAACTTTTTAATTTA
128 AGTTCAGAAGTTAGTCCAAGAACCA-AGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCA
*
24410 TAGACCAAAAGTTGTTTACAAAATG
192 AAGACCAAAAGTTGTTTACAAAATG
* *
24435 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTTGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGG
* * * * * *
24500 AATGGATTGTCATGAATTCTTTAAAGAAC-GAAAGTTATAGATGAACTGGTAAAAGTT-TTCCAA
66 AATGGATTGTCATGAATACTTTAAAGAACTG-AAGTTATAAAAGAACTCGTAAAACTTCGT-CAA
* * *
24563 GTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCATGTAAATAAGTTTTTCATTCAAA
129 GTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAAA
* *
24628 GACCAAAAGTTATTTAGAAAATG
194 GACCAAAAGTTGTTTACAAAATG
* *
24651 ACAAAGTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCT-AAG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT-TGAAG
** * * * *
24715 GAATGGATTGTTTTGAATACTTT-AAGAAATCAAAGTTATAGAAGAACTCGTAAAAGTAT-GTCA
65 GAATGGATTGTCATGAATACTTTAAAGAACT-GAAGTTATAAAAGAACTCGTAAAACT-TCGTCA
** * * * **
24778 AGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTCAA
128 AGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
*
24843 AGACCAAAAGTTGTTTAGAAAATG
193 AGACCAAAAGTTGTTTACAAAATG
* * * * **
24867 AAAAACTATTTTAGACAAAATGATGCGATTTCCCGTGCTTGGAATGTTCGAAAAATTGCTCAAAG
1 ACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAG
* * * * *
24932 GAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAACTTCATCATG
65 GAATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCAAG
* * * * *
24997 TTCAGAAGTTCA-ACCAACAACAAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTTATA
130 TTCAGAAGTT-AGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAAA
*
25061 GACAAAAAGTTGTTTACAAAATG
194 GACCAAAAGTTGTTTACAAAATG
* * * **
25084 ACAAACTATTTAGACTAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACGAGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGG
* * *
25149 AATGAATTGTCATGAATACTTT-ATGTAACTGAAGTTATAAAAGAACTCG-AAGGAA--T-G--G
66 AATGGATTGTCATGAATACTTTAAAG-AACTGAAGTTATAAAAGAACTCGTAA--AACTTCGTCA
* * ** * * * * *
25207 ATTGTCATGAA--TACTTTAATGAACCAA-ATTTATAGAACAACTGGTAAAAGCTTGTGAAGTTC
128 AGT-TCA-GAAGTTAGTCCAA-GAACCAAGA--GAGA-AACAACT-CT--CA-C--GT-AA-AT-
* * * * * * *
25269 GCAACTTTGTCCATGATCCAAGAGA-TAATAAATT-CTCACGTAAAT-
178 --AACTTT-T---TAATTCAA-AGACCAA-AAGTTGTTTAC-AAAATG
* * * ** * *** *
25314 ---AAGTTTTTA-ATTC-AATGACAAACTATTTAGACAAAATG-ATGTG-AT-TTCCCAAACATG
1 ACAAACTATTTAGA-CCAAATG--ATGCGATTT---CCCGA-GCATG-GAATGTT--CGAA-A--
* * ** * * * * * *
25371 AAATG-TTCAAAAAATTGCTCG-AAGGAATGCATCGTCATTAATACTTTAGAGAACCGAAGTTAT
53 AATTGCTTGAAGGAATGGATTGTCATGAAT--A----C-TT--TA----A-AGAACTGAAGTTAT
* * * * * * * *
25434 AGAAGAACTCGTCAAAGTTTGTCAAGTTTAGAAGTTCA-TCCAATATCCAAGAGAGAAAAAACTC
104 AAAAGAACTCGTAAAACTTCGTCAAGTTCAGAAGTT-AGTCCAAGAACCAAGAGAGAAACAACTC
* * * *
25498 TCACGTAAATAACATTTTAATTTATAGACCAAAAACTTGTTTACAAAATG
168 TCACGTAAATAACTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATG
* * * * * * * ** * * *
25548 AAAAACTATTCAGACTAAATTATGTGATTTTCAGAGCATTAAATGTTCGGAAAATTACTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGG
** * * * *
25613 AATGGATCATCATGAATAATTT-ATGATACTGAAGTTATAAAAGAACTCGTAAAAGTTTG-CTAA
66 AATGGATTGTCATGAATACTTTAAAGA-ACTGAAGTTATAAAAGAACTCGTAAAACTTCGTC-AA
* * * * * *
25676 GCTCGGAAGTTCA-TCCAAGAACCAAGATAGAAATAACTCTCACGTAAATAAGTTTTTCATTCAA
129 GTTCAGAAGTT-AGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
* *
25740 AGTCCAAAAGTAGTTT-----A-G
193 AGACCAAAAGTTGTTTACAAAATG
* * * *
25758 --AAA--A--T-GA-CAAATTATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCACT-AAG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC-TTGAAG
* * * ** * *
25814 GAATGGATTGTTC-TGAATACTAT-AAGAAACCGATGTTATTGAAGAACTCGTAAAAGTTTGTCA
65 GAATGGATTG-TCATGAATACTTTAAAG-AACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCA
** ** * * ** *
25877 AGTTTGGAAGTTCTTCTAAGAACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTCTAATTCAA
128 AGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
** * *
25942 AGATAAAAAGTTGTTCAGAAAATG
193 AGACCAAAAGTTGTTTACAAAATG
* * * * *
25966 ACAAACTATTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGGAAAATTACTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGG
** * * * * *
26031 AATGGATCATCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATCAAGT
66 AATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCAAGT
* * * * *
26096 T-TGAAAGTTTGTCCAAGAA-CATACAGAGAAACAATTCTCACGTAAATAA-TATTTTAATTTAA
131 TCAG-AAGTTAGTCCAAGAACCA-AGAGAGAAACAACTCTCACGTAAATAACT-TTTTAATTCAA
26158 AGACCAAAAGTTGTTTACAAAATG
193 AGACCAAAAGTTGTTTACAAAATG
* * * * * * *
26182 ACAAACTATTTAGACTAAATTATTCGAATTCCCGAGCATGGAATG-TCAAAAAATTACTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGG
* * ** ** * * * * * * *
26246 AATGGGTTGTCATGAACACTTTATTGAACCAAAGTTATAGAACAATTGGTAAAAGTTTGTGAAGT
66 AATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCAAGT
* * * * * * * *
26311 TCAGAAGTTTGTCCATGATCCAAGAGATAATA-AATTCTCACATAAATAAGTTTTTAATTCAATG
131 TCAGAAGTTAGTCCAAGAACCAAGAGAGAA-ACAACTCTCACGTAAATAACTTTTTAATTCAAAG
* *
26375 ACCAAAAGTTGTATACCAAATG
195 ACCAAAAGTTGTTTACAAAATG
* * * * * * *
26397 ACAAAATATTTTGACAAAATGATGTGATTTCCCAAGCAAGGAATGTTC-AGAAAATTGCTCGAAG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTTGAAG
* * * * * ** *
26461 GAATGCATCGTCATGAATACTTTAAAGAACCGAAGTTATAGAAGAACTCGTCAATGTTTGTCAAG
65 GAATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCAAG
* * * * * * * *
26526 TTTAGAAGTTCA-TCCAATATCCAAGAGAGAAACAATTCTCATGTCAATAAGTTTTTCATTCAAA
130 TTCAGAAGTT-AGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAAA
*
26590 GACCAAAAGTTGTTTACCAAATG
194 GACCAAAAGTTGTTTACAAAATG
** * * * * *
26613 ACAAA-TAGTTTAGAGAAAATTATACGATTTCCCAAGCATGAAATGTTCAAAAAATTGCTTGAAG
1 ACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAG
** * * * * * *
26677 GAATGGATCATTATGAATACTTT-ACGAAACTGAAGTTATAAAAGAACTTGTAAAATTTTGCCAA
65 GAATGGATTGTCATGAATACTTTAAAG-AACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCAA
* * *
26741 GTTCAGAAGTTCA-TCCAAGAACCAAGATAGAAACAACTCTCACGTAAATAAGTTTTTCATTCAA
129 GTTCAGAAGTT-AGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
* * *
26805 AGACCAAAAGTAGTTTAGAAAAGG
193 AGACCAAAAGTTGTTTACAAAATG
* ** * * *
26829 ACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCATAAAATGTTCAAAAAATTTCTCT-AAA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT-TGAAG
* ** * * * *
26893 GAATGGATTGTCCTGAATACTTT-AAGAAACTGAAGTTATTGAAGAACTTGTAAAATTTTGTCTA
65 GAATGGATTGTCATGAATACTTTAAAG-AACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCAA
** * * * * **
26957 GTTTGGAAGTGCA-TCTAAGAACCAAGAGAAAAATAACTCTCACGTAAATAGGTTTTTAATTCAA
129 GTTCAGAAGT-TAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
** *
27021 AGATAAAAAGTTGTTTAGAAAATG
193 AGACCAAAAGTTGTTTACAAAATG
* * * *
27045 ACAAACTATTTATA-CAAAGTGATGCGATTTCCTGTGCATGGAATGTTCGAAAAATTGCTCGAAG
1 ACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAG
* * * * * * * *
27109 GAATGGATCGTCATGAATACTTCAAGGAGCTGAAGTTTTAAAAGAACT-TTAAAAACATCATCAA
65 GAATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGT-AAAACTTCGTCAA
* * * * * * ** *
27173 TTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAAGTAAA-AAGATTTTAATTTAAA
129 GTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAAA
* * *
27237 GAACAAAAGTTGTTTACGAATTG
194 GACCAAAAGTTGTTTACAAAATG
** * * *
27260 ACAAACTATTTAGACCAAATGATGTTATTTCCCGAGCATGGAACGTTTGGAAAATTGCTTGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGG
* * * * *
27325 AATGGATTGTCATGAATACTTTAAGGAAC-GAAAGTTATAGATGAACTGGTAAAAGATT--TCCA
66 AATGGATTGTCATGAATACTTTAAAGAACTG-AAGTTATAAAAGAACTCGTAAAA-CTTCGT-CA
* * * * *
27387 AGTTCAGAAGTTTGTCCAAGAGCCAAGAGAGAAATAACTCTCACGTAAATAAGTTTTTCATTCAA
128 AGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
*
27452 AGACCAAAAGTTGTTTAGAAAATG
193 AGACCAAAAGTTGTTTACAAAATG
* * * **
27476 ACAAAGTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCAAAAAATAACTCT-AAG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT-TGAAG
* * * * * *
27540 GAATAGATTGTCTTGAATACTTT-AAGAAATCAAAGTTATAGAAGAACTCGTAAAAGTAT-GTCA
65 GAATGGATTGTCATGAATACTTTAAAGAACT-GAAGTTATAAAAGAACTCGTAAAACT-TCGTCA
** * * * * * ** *
27603 AGTTTGGAAGTTCGTCTAAGAATCAAAAGAGAAACAACTCTCACATAAATAGGTTTTTATTTCAA
128 AGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
* *
27668 AGACCAAAAGTTTTTTAGAAAATG
193 AGACCAAAAGTTGTTTACAAAATG
* * *
27692 ACAAACTATTTAGA-CATAATGATGCGATTT-CCTATGCTTGGAATGTTCGAAAAATTGCTCGAA
1 ACAAACTATTTAGACCA-AATGATGCGATTTCCCGA-GCATGGAATGTTCGAAAAATTGCTTGAA
** * * * *
27755 GGAAACG-TTCGTCATGAATACTTTAAGGAATTGAAGTTTTAAAAGAACTCATAAAACTTCGTCA
64 GGAATGGATT-GTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCA
* * * *
27819 AGTTC-GTAAGTTCGTCCAAGAACAAAGAGAGAAACAACTCTCACTTAAATAACTTTTTAATTTA
128 AGTTCAG-AAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCA
*
27883 TAGACCAAAAGTTGTTTACAAAATGTG
192 AAGACCAAAAGTTGTTTACAAAA--TG
* * * * ** * *
27910 TTCGAAA--AATT--ACTCGAAGGAATG-GATTGTCATGACTACTTTATGTAACTGAAGTT--AT
1 -AC-AAACTATTTAGAC-CAAATG-ATGCGATT-TCCCGA--GC---ATGGAA-T---GTTCGA-
*** * * ** * * * *
27968 AAAAGAACTCGAAGGAATGGATTGTCATGAATACTTTAATGAACCAAATTTATAGAACAACTGGT
51 AAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGT
* * * * * ** * * * * *
28033 AAAAGTTTGTGAAGTTCGGAAGTTTGTCCATCATCCAAAAGATAATA-AATTCTCATGTAAATAA
116 AAAACTTCGTCAAGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAA-ACAACTCTCACGTAAATAA
* * * *
28097 GTTTTTAATTCAATGACCAAAAGTTATTTAGAAAATG
180 CTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * **
28134 ACAAAGTATTTAGACCAAATGACGTGATTTCCCGAGCATGGAATGTTTAAAAAATTGCTCT-AAG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT-TGAAG
* * * *
28198 GAATGGATTGTCTTGAATACTTT-AAGAAATCGAAGTTATAGAAGAACTCGTAAAAGTAT-GTCA
65 GAATGGATTGTCATGAATACTTTAAAGAACT-GAAGTTATAAAAGAACTCGTAAAACT-TCGTCA
** * * ** *
28261 AGTTTGGAAGTT-GTCTAAGAACCAAGAGAGAAACAACTCTCACATAAATAGGTTTTTAATTCGA
128 AGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAA
*
28325 AGACCAAAAGTTGTTTAGAAAATG
193 AGACCAAAAGTTGTTTACAAAATG
28349 ACAAACTATTTAGA-CATAATGATG
1 ACAAACTATTTAGACCA-AATGATG
28373 TGAGCATGGT
Statistics
Matches: 3111, Mismatches: 635, Indels: 385
0.75 0.15 0.09
Matches are distributed among these distances:
202 148 0.05
203 6 0.00
206 1 0.00
207 1 0.00
208 4 0.00
210 4 0.00
211 2 0.00
212 6 0.00
213 8 0.00
214 11 0.00
215 477 0.15
216 1735 0.56
217 296 0.10
218 17 0.01
219 8 0.00
220 5 0.00
221 2 0.00
222 7 0.00
223 6 0.00
224 14 0.00
225 9 0.00
226 135 0.04
227 15 0.00
228 6 0.00
229 4 0.00
230 20 0.01
231 24 0.01
232 11 0.00
233 24 0.01
234 14 0.00
235 4 0.00
236 6 0.00
237 11 0.00
238 4 0.00
239 1 0.00
240 3 0.00
241 2 0.00
242 3 0.00
244 1 0.00
245 1 0.00
246 2 0.00
247 23 0.01
248 9 0.00
249 6 0.00
250 7 0.00
251 7 0.00
252 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGG
AATGGATTGTCATGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAACTTCGTCAAGT
TCAGAAGTTAGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAACTTTTTAATTCAAAGA
CCAAAAGTTGTTTACAAAATG
Found at i:28021 original size:53 final size:53
Alignment explanation
Indices: 27921--28021 Score: 150
Period size: 53 Copynumber: 1.9 Consensus size: 53
27911 TCGAAAAATT
* **
27921 ACTCGAAGGAATGGATTGTCATGACTACTTTATGTAACTGAAGTTATAAAAGA
1 ACTCGAAGGAATGGATTGTCATGAATACTTTATGTAACCAAAGTTATAAAAGA
*
27974 ACTCGAAGGAATGGATTGTCATGAATACTTTAATG-AACCAAATTTATA
1 ACTCGAAGGAATGGATTGTCATGAATACTTT-ATGTAACCAAAGTTATA
28022 GAACAACTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 40 0.93
54 3 0.07
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (53 bp):
ACTCGAAGGAATGGATTGTCATGAATACTTTATGTAACCAAAGTTATAAAAGA
Found at i:28133 original size:22 final size:21
Alignment explanation
Indices: 28108--28156 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 21
28098 TTTTTAATTC
28108 AATGACCAAAAGTTATTTAGA-A
1 AATGACC-AAAG-TATTTAGACA
28130 AATGA-CAAAGTATTTAGACCA
1 AATGACCAAAGTATTTAGA-CA
28151 AATGAC
1 AATGAC
28157 GTGATTTCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 8 0.33
20 4 0.17
21 7 0.29
22 5 0.21
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.24
Consensus pattern (21 bp):
AATGACCAAAGTATTTAGACA
Found at i:28522 original size:17 final size:17
Alignment explanation
Indices: 28502--28534 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
28492 TTTAAGGACT
28502 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
28519 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
28535 TAAGTATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:28822 original size:50 final size:52
Alignment explanation
Indices: 28768--28883 Score: 148
Period size: 50 Copynumber: 2.3 Consensus size: 52
28758 CAAATAATGA
* *
28768 CATGCATTAAGTAACTTACATGTTAGTTAAA-TATGCATCA-TAAATCCTA-T
1 CATGCATTAAGTAACTCACATGTTAGTTAAAGTATGCATCATTAAAT-CAAGT
* * *
28818 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATCAAGT
1 CATGCATTAAGTAACTCACATGTTAGTTAAAGTATGCATCATTAAATCAAGT
*
28870 CATGCATTTAGTAA
1 CATGCATTAAGTAA
28884 TCCATTAGTT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
50 28 0.50
51 10 0.18
52 18 0.32
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.36
Consensus pattern (52 bp):
CATGCATTAAGTAACTCACATGTTAGTTAAAGTATGCATCATTAAATCAAGT
Found at i:32639 original size:17 final size:17
Alignment explanation
Indices: 32619--32651 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32609 TTTAAGGACT
32619 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
32636 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
32652 TAAGTATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:32894 original size:47 final size:49
Alignment explanation
Indices: 32833--32930 Score: 121
Period size: 50 Copynumber: 2.0 Consensus size: 49
32823 GAGCGTTATG
* *
32833 TAATGACATCCATTAACT-C-T-CATGATTAGTTAAGTTTGCATCATAAA
1 TAATGACATCCATTAACTACTTACATG-TTAGTTAAATATGCATCATAAA
* *
32880 TAATGACATGCATTAAGTAACTTACATGTTAGTTAAATATGCATCATAAA
1 TAATGACATCCATTAACT-ACTTACATGTTAGTTAAATATGCATCATAAA
32930 T
1 T
32931 CCTATCATGC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
47 16 0.37
49 1 0.02
50 22 0.51
51 4 0.09
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (49 bp):
TAATGACATCCATTAACTACTTACATGTTAGTTAAATATGCATCATAAA
Found at i:32925 original size:50 final size:50
Alignment explanation
Indices: 32846--33001 Score: 154
Period size: 50 Copynumber: 3.1 Consensus size: 50
32836 TGACATCCAT
* *
32846 TAACTCTCATGATTAGTTAAGTTTGCATCATAAATAATGACATGCATTAAG
1 TAACTCACATG-TTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
* * ** *
32897 TAACTTACATGTTAGTTAAATATGCATCATAAATCCT-ATCATGCATTACG
1 TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGA-CATGCATTAAG
* * * *
32947 TAACTCCCATGTTAGTTAAAGTTTACATCATTAAATCAA-GTCATGCATTTAG
1 TAACTCACATGTTAGTTAAA-TTTGCATCA-TAAAT-AATGACATGCATTAAG
32999 TAA
1 TAA
33002 TCCATTAGTT
Statistics
Matches: 84, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
49 1 0.01
50 50 0.60
51 16 0.19
52 17 0.20
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.36
Consensus pattern (50 bp):
TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
Found at i:34465 original size:53 final size:53
Alignment explanation
Indices: 34385--34493 Score: 157
Period size: 53 Copynumber: 2.1 Consensus size: 53
34375 TCGAAAAATT
* ** *
34385 ACTCGAAGGAATGGATTGTCATGAATACTTT-ATGTAACTGAAGTTATAAAAGA
1 ACTCGAAGGAATCGATTGTCATGAATACTTTAATG-AACCCAAGTTATAAAACA
*
34438 ACTCGAAGGAATCGATTGTTATGAATACTTTAATGAACCCAAGTTATAAAACA
1 ACTCGAAGGAATCGATTGTCATGAATACTTTAATGAACCCAAGTTATAAAACA
34491 ACT
1 ACT
34494 GGTAAAAGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
53 47 0.94
54 3 0.06
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (53 bp):
ACTCGAAGGAATCGATTGTCATGAATACTTTAATGAACCCAAGTTATAAAACA
Found at i:34653 original size:269 final size:268
Alignment explanation
Indices: 34170--34685 Score: 662
Period size: 269 Copynumber: 1.9 Consensus size: 268
34160 TGGAAAATTG
* ** *
34170 CTCGAAGGAATGGATCATCATGAATACTTTAAGGAACTGAAGTCTTAAAAGAACTCGTAAAACTT
1 CTCGAAGGAATCGATCATCATGAATACTTTAAGGAACCCAAGTCTTAAAACAACTCGTAAAACTT
34235 CGTCAAGTTCGGAAGTTCGTCCAAGAACAAAGAAAGAAACAAATCTCACGTAAAAAACTTTTTAA
66 CGTCAAGTTCGGAAGTTCGTCCAAGAACAAAG-AAGAAACAAATCTCACGTAAAAAACTTTTTAA
* * * * * * *
34300 TTTATAGACCAAAAGTTGTTTACAAAATGACTAACTATTTAGACTAAATTATGCGATTTCCTGAG
130 TTAATAGACCAAAAGTTGTATACAAAACGACAAACTATTTAGACAAAATGATACGATTTCCTGAG
* *
34365 CATGGAATGTTCGAAAAATTACTCGAAGGAATGGATTGTCATGAATACTTTATGTAACTGAAGTT
195 CATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCATAAATACTTTATGTAACTGAAGTT
34430 ATAAAAGAA
260 ATAAAAGAA
** * * * *
34439 CTCGAAGGAATCGATTGTTATGAATACTTTAATGAACCCAAGT-TATAAAACAACTGGTAAAAGT
1 CTCGAAGGAATCGATCATCATGAATACTTTAAGGAACCCAAGTCT-TAAAACAACTCGTAAAACT
* * * * * * * * *
34503 TTGTGAAGTTCGGAAGTTTGTCCATGATCCAAG-AGATAATAAATTCTCACGTAAATAAGTTTTT
65 TCGTCAAGTTCGGAAGTTCGTCCAAGAACAAAGAAGA-AACAAA-TCTCACGTAAAAAACTTTTT
* *
34567 AATTCAAT-GACCAAAAGTTGTATACCAAACGACAAACTATTTAGACAAAATGATATGATTTCCC
128 AATT-AATAGACCAAAAGTTGTATACAAAACGACAAACTATTTAGACAAAATGATACGATTT-CC
* *
34631 T-AGCATGGAATGTTCTAAAAATTGCTCGAAGGAATGGATCGTCATAAATACTTTA
191 TGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCATAAATACTTTA
34686 AAGAACCAAA
Statistics
Matches: 210, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
267 3 0.01
268 6 0.03
269 196 0.93
270 5 0.02
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (268 bp):
CTCGAAGGAATCGATCATCATGAATACTTTAAGGAACCCAAGTCTTAAAACAACTCGTAAAACTT
CGTCAAGTTCGGAAGTTCGTCCAAGAACAAAGAAGAAACAAATCTCACGTAAAAAACTTTTTAAT
TAATAGACCAAAAGTTGTATACAAAACGACAAACTATTTAGACAAAATGATACGATTTCCTGAGC
ATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCATAAATACTTTATGTAACTGAAGTTA
TAAAAGAA
Found at i:35181 original size:184 final size:182
Alignment explanation
Indices: 34854--35200 Score: 500
Period size: 182 Copynumber: 1.9 Consensus size: 182
34844 AGTTCAGAAG
* * ** *
34854 TTCATCCAAGAACCAAGATAGAAACAACTCTCACGTAAATAAGTTTTTCTTTCAAAGACCAAAAG
1 TTCATCCAAGAACCAAGAGAAAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAG
* *
34919 TAGTTTAGAAAATGACAAATTATTTAGACCAAATGCGATTTCCCGAGCATGGAATGTTCAACAAA
66 TAGTTTAGAAAATGACAAACTATTTAGACAAAATGCGATTTCCCGAGCATGGAATGTTCAACAAA
* * *
34984 TTGCTCTAAGGAATGGATTGTCCTGAATACTTTTAGAAACCGAGGTTATTGA
131 TTGCTCGAAGGAATGGATCGTCATGAATACTTTTAGAAACCGAGGTTATTGA
* * *
35036 TTCATCTAAGAACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGATAAAAAG
1 TTCATCCAAGAACCAAGAGAAAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAG
* *
35101 T-GTTTAGAAAATGACAAACTATTTATACAAAATGATGCGATTTCCCGTGCATGGAATGTTCAA-
66 TAGTTTAGAAAATGACAAACTATTTAGAC-AAA--ATGCGATTTCCCGAGCATGGAATGTTCAAC
*
35164 ATAATTGCTCGAAGGAATGTATCGTCATGAATACTTT
128 A-AATTGCTCGAAGGAATGGATCGTCATGAATACTTT
35201 AAGGAACTGA
Statistics
Matches: 145, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
181 25 0.17
182 60 0.41
183 1 0.01
184 59 0.41
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (182 bp):
TTCATCCAAGAACCAAGAGAAAAACAACTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAG
TAGTTTAGAAAATGACAAACTATTTAGACAAAATGCGATTTCCCGAGCATGGAATGTTCAACAAA
TTGCTCGAAGGAATGGATCGTCATGAATACTTTTAGAAACCGAGGTTATTGA
Found at i:35813 original size:216 final size:215
Alignment explanation
Indices: 35040--35901 Score: 896
Period size: 215 Copynumber: 4.0 Consensus size: 215
35030 TATTGATTCA
* * **
35040 TCTAAGAACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGATAAAAAG-TGT
1 TCTAAGAACCAAGAGATAAACAACTCTCACATAAATAGG-TTTTAATTCAAAGACCAAAAGTTGT
* * *
35104 TTAGAAAATGACAAACTATTTATACAAAATGATGCGATTTCCCGTGCATGGAATGTTCAAATAAT
65 TTACAAAATGACAAACTATTTATACAAAATGATGCGATTTCCCATGCATGGAATGTTCAAAAAAT
* * *
35169 TGCTCGAAGGAATGTATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTG-AAAAT
130 TGCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACTAAAGTTATAAAAGAACTTGTAAAA-
* *
35233 TTTCATCAAGTTCGAAAGTTCA
194 GTTCATCAAGTTCGAAAGTTCG
* * * * ***
35255 TCTAAGAA-CAAG-GAGAAACAATTCTCACGTAAATAAGATTTTAATTTGTAGACCAAAAGTTGT
1 TCTAAGAACCAAGAGATAAACAACTCTCACATAAAT-AGGTTTTAATTCAAAGACCAAAAGTTGT
* * * * * *
35318 TTACAAAATGTA-AAACTATTTAGACGAAATTATGTGATTTCTCGA-GCATGGAATGTTCGAAAA
65 TTACAAAATG-ACAAACTATTTATACAAAATGATGCGATTTC-CCATGCATGGAATGTTCAAAAA
* * * * * * ** * *
35381 ATTACTCGAAGGAATGCATTGTCATGAATACCTTAATGAACCAAAGTTATTGAACAACTGGTAAA
128 ATTGCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACTAAAGTTATAAAAGAACTTGTAAA
* * * *
35446 AGTTCGTGAAATTCGAAAGTTTG
193 AGTTCATCAAGTTCGAAAGTTCG
* * * * * * *
35469 TCCACGATCCAAGAGATAATA-AATTCTCAGATAAATAAGTTTTAATTCAATGACCAAAAGTTGT
1 TCTAAGAACCAAGAGATAA-ACAACTCTCACATAAATAGGTTTTAATTCAAAGACCAAAAGTTGT
* * * * * *
35533 ATACCAAATGACAAACCATTT-TGACAAAATGATGTGATTTCCCAAGCTTGGAATGTTCAAAAAA
65 TTACAAAATGACAAACTATTTAT-ACAAAATGATGCGATTTCCCATGCATGGAATGTTCAAAAAA
* * * * * * * *
35597 TTGCTCTAAGGAATGGATTGTCCTGAATACTTTAA-GAAATCGAAGTTATAGAGGAACTCGTAAA
129 TTGCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACT-AAAGTTATAAAAGAACTTGTAAA
* * *
35661 AGTTTATCAAGTTTGGAAGTTCG
193 AGTTCATCAAGTTCGAAAGTTCG
*
35684 TCTAAGAACCAAGAGATAAACAACTCTCACATAAATAGGTTTCCAATTCAAAGACCAAAAGTTGT
1 TCTAAGAACCAAGAGATAAACAACTCTCACATAAATAGGTTT-TAATTCAAAGACCAAAAGTTGT
* * * * * * *
35749 TTAGAAAATGACGAACTATTTATACATAATAATGCGTTTTCCCATGCTTGGATTGTTCAAAAAAT
65 TTACAAAATGACAAACTATTTATACAAAATGATGCGATTTCCCATGCATGGAATGTTCAAAAAAT
* * * *
35814 TGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACTAAAGTTTTAAAAGAACTTGCAAAAC
130 TGCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACTAAAGTTATAAAAGAACTTGTAAAAG
*
35879 TTCATCAAGTTCGGAAGTTCG
195 TTCATCAAGTTCGAAAGTTCG
35900 TC
1 TC
35902 CAAGGGCAAA
Statistics
Matches: 524, Mismatches: 107, Indels: 31
0.79 0.16 0.05
Matches are distributed among these distances:
213 36 0.07
214 136 0.26
215 187 0.36
216 159 0.30
217 6 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
TCTAAGAACCAAGAGATAAACAACTCTCACATAAATAGGTTTTAATTCAAAGACCAAAAGTTGTT
TACAAAATGACAAACTATTTATACAAAATGATGCGATTTCCCATGCATGGAATGTTCAAAAAATT
GCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACTAAAGTTATAAAAGAACTTGTAAAAGT
TCATCAAGTTCGAAAGTTCG
Done.