Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008753.1 Kokia drynarioides strain JFW-HI SEQ_123436, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2736
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:1557 original size:42 final size:42

Alignment explanation


    Indices: 1510--1598  Score: 142
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       1500 TTTTTTAAAT

                         * *            *             
       1510 TTTAAAAATTTCATCTTAACTGAACGGTGGTAGATAAATTCG
          1 TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG

                                                      
       1552 TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG
          1 TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG

            *    
       1594 ATTAA
          1 TTTAA

       1599 GTTATGTTAT


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34


Consensus pattern (42 bp):   
TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG
Done.