Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008756.1 Kokia drynarioides strain JFW-HI SEQ_123439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2999
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33


Found at i:1257 original size:2 final size:2

Alignment explanation


    Indices: 1250--1276  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       1240 TTGTCATTAG

                                                    
       1250 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1277 TAAAAGAAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:1820 original size:17 final size:17

Alignment explanation


    Indices: 1798--1832  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1788 TTTTCCTAAA

                        *    
       1798 AATGACTAAATTGTGTG
          1 AATGACTAAATTATGTG

                   *         
       1815 AATGACTCAATTATGTG
          1 AATGACTAAATTATGTG

             
       1832 A
          1 A

       1833 TTTAATATGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34


Consensus pattern (17 bp):   
AATGACTAAATTATGTG
Done.