Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008759.1 Kokia drynarioides strain JFW-HI SEQ_123442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78620
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Found at i:1441 original size:20 final size:21
Alignment explanation
Indices: 1415--1467 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
1405 TAAACCTTAA
1415 ATTCGAGGTTTGGA-TTTGAG
1 ATTCGAGGTTTGGAGTTTGAG
* *
1435 GTTCGAGGTTTAGAGTTTGAG
1 ATTCGAGGTTTGGAGTTTGAG
1456 ATTCGA-GTTTGG
1 ATTCGAGGTTTGG
1468 GGATTTAGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.19, C:0.06, G:0.36, T:0.40
Consensus pattern (21 bp):
ATTCGAGGTTTGGAGTTTGAG
Found at i:2072 original size:24 final size:24
Alignment explanation
Indices: 2043--2107 Score: 62
Period size: 29 Copynumber: 2.6 Consensus size: 24
2033 AGAGTTAAAA
*
2043 TATAGTTTTATTATTTTAGTAGTT
1 TATAGTTTTATTATTTTAGTAGCT
2067 TATAGTATAATTTTATTATTTTAGTAGCT
1 TATAG-----TTTTATTATTTTAGTAGCT
2096 TATA-TTTT-TTAT
1 TATAGTTTTATTAT
2108 AATTTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
22 4 0.11
23 4 0.11
24 5 0.14
29 22 0.63
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.62
Consensus pattern (24 bp):
TATAGTTTTATTATTTTAGTAGCT
Found at i:2080 original size:29 final size:29
Alignment explanation
Indices: 2043--2099 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
2033 AGAGTTAAAA
* *
2043 TATAGTTTTATTATTTTAGTAGTTTATAG
1 TATAATTTTATTATTTTAGTAGCTTATAG
2072 TATAATTTTATTATTTTAGTAGCTTATA
1 TATAATTTTATTATTTTAGTAGCTTATA
2100 TTTTTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.58
Consensus pattern (29 bp):
TATAATTTTATTATTTTAGTAGCTTATAG
Found at i:4783 original size:21 final size:22
Alignment explanation
Indices: 4742--4803 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
4732 AATTATATTG
* * *
4742 TTGTTTTGGTTGCTATTTTTTT
1 TTGTTTTGGTTGTTGTTTTTTA
4764 TTGTTTTGG-TGTTGTTTTTTA
1 TTGTTTTGGTTGTTGTTTTTTA
* *
4785 CTATTTTGGTTGTTGTTTT
1 TTGTTTTGGTTGTTGTTTT
4804 GATTTTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.05, C:0.03, G:0.21, T:0.71
Consensus pattern (22 bp):
TTGTTTTGGTTGTTGTTTTTTA
Found at i:4811 original size:20 final size:20
Alignment explanation
Indices: 4788--4826 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4778 TTTTTTACTA
*
4788 TTTTGGTTGTTGTTTTGATT
1 TTTTGGTTATTGTTTTGATT
**
4808 TTTTTTTTATTGTTTTGAT
1 TTTTGGTTATTGTTTTGAT
4827 GTTGTTATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.18, T:0.74
Consensus pattern (20 bp):
TTTTGGTTATTGTTTTGATT
Found at i:4840 original size:20 final size:20
Alignment explanation
Indices: 4797--4862 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
4787 ATTTTGGTTG
* *
4797 TTGTTTTGAT-TTTTTTTTT
1 TTGTTTTGATGTTGTTATTT
4816 ATTGTTTTGATGTTGTTATTT
1 -TTGTTTTGATGTTGTTATTT
*
4837 TTGTTGTTGTTTTGTTGTTATTT
1 TTGTT-TTG--ATGTTGTTATTT
4860 TTG
1 TTG
4863 CTGCTGTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
20 15 0.38
21 10 0.26
23 14 0.36
ACGTcount: A:0.08, C:0.00, G:0.18, T:0.74
Consensus pattern (20 bp):
TTGTTTTGATGTTGTTATTT
Found at i:4841 original size:12 final size:12
Alignment explanation
Indices: 4826--4884 Score: 75
Period size: 12 Copynumber: 5.0 Consensus size: 12
4816 ATTGTTTTGA
4826 TGTTGTTATTTT
1 TGTTGTTATTTT
*
4838 TGTTGTT-GTTT
1 TGTTGTTATTTT
4849 TGTTGTTATTTT
1 TGTTGTTATTTT
* * *
4861 TGCTGCTGTTTT
1 TGTTGTTATTTT
4873 TGTTGTTATTTT
1 TGTTGTTATTTT
4885 GGTTATTTGA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
11 10 0.26
12 28 0.74
ACGTcount: A:0.05, C:0.03, G:0.20, T:0.71
Consensus pattern (12 bp):
TGTTGTTATTTT
Found at i:4852 original size:23 final size:23
Alignment explanation
Indices: 4767--4884 Score: 107
Period size: 23 Copynumber: 5.1 Consensus size: 23
4757 TTTTTTTTTG
* **
4767 TTTTGGTGTTGTTTT-TTACTAT
1 TTTTGTTGTTGTTTTGTTGTTAT
* *
4789 TTTGGTTGTTGTTTTGATT-TTTT
1 TTTTGTTGTTGTTTTG-TTGTTAT
* *
4812 TTTTATTGTT-TTGATGTTGTTAT
1 TTTTGTTGTTGTT-TTGTTGTTAT
4835 TTTTGTTGTTGTTTTGTTGTTAT
1 TTTTGTTGTTGTTTTGTTGTTAT
* *
4858 TTTTGCTGCTGTTTTTGTTGTTAT
1 TTTTGTTGTTG-TTTTGTTGTTAT
4882 TTT
1 TTT
4885 GGTTATTTGA
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
22 17 0.22
23 42 0.54
24 19 0.24
ACGTcount: A:0.07, C:0.03, G:0.19, T:0.71
Consensus pattern (23 bp):
TTTTGTTGTTGTTTTGTTGTTAT
Found at i:5048 original size:26 final size:28
Alignment explanation
Indices: 5018--5085 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 28
5008 ATATAAAAAA
5018 ATTTTAGTGTATTTTAAATTTATTT-ATT
1 ATTTTA-TGTATTTTAAATTTATTTGATT
*
5046 -TTTTAATGT-TTTTAAGTTTATTTGA-T
1 ATTTT-ATGTATTTTAAATTTATTTGATT
*
5072 ATTTTATATATTTT
1 ATTTTATGTATTTT
5086 TTAAATTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
26 17 0.50
27 16 0.47
28 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.66
Consensus pattern (28 bp):
ATTTTATGTATTTTAAATTTATTTGATT
Found at i:5102 original size:29 final size:27
Alignment explanation
Indices: 5019--5102 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 27
5009 TATAAAAAAA
*
5019 TTTTAGTGTATTTTAAATTTATTTAT-T
1 TTTTAATGT-TTTTAAATTTATTTATAT
*
5046 TTTTAATGTTTTTAAGTTTATTTGATAT
1 TTTTAATGTTTTTAAATTTATTT-ATAT
*
5074 TTTATATAT-TTTTTAAATTTGTTGTATAT
1 TTT-TA-ATGTTTTTAAATTTATT-TATAT
5103 AATAAAATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
26 13 0.27
27 10 0.21
28 4 0.08
29 18 0.38
30 3 0.06
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.65
Consensus pattern (27 bp):
TTTTAATGTTTTTAAATTTATTTATAT
Found at i:7710 original size:15 final size:16
Alignment explanation
Indices: 7680--7718 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
7670 TAATAAAAAT
7680 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
7697 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
7712 ATAATTT
1 ATAATTT
7719 TAAATGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:14613 original size:2 final size:2
Alignment explanation
Indices: 14606--14642 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
14596 TCCCCCGCCT
*
14606 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14643 GCCTCGCGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:22577 original size:16 final size:16
Alignment explanation
Indices: 22556--22605 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
22546 TGATGGAGAT
22556 ATTATTTTGATAATTA
1 ATTATTTTGATAATTA
*
22572 ATTATTTT-TTATATT-
1 ATTATTTTGATA-ATTA
*
22587 A-TATTTTGGTAATTA
1 ATTATTTTGATAATTA
22602 ATTA
1 ATTA
22606 GTTATGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 6 0.21
16 13 0.46
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (16 bp):
ATTATTTTGATAATTA
Found at i:23108 original size:20 final size:21
Alignment explanation
Indices: 23083--23125 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
23073 TACTTACTAC
23083 TACTAAC-AACAAAATAAAAT
1 TACTAACTAACAAAATAAAAT
*
23103 TACTAACTAACAAAATTAAAT
1 TACTAACTAACAAAATAAAAT
23124 TA
1 TA
23126 AAGTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (21 bp):
TACTAACTAACAAAATAAAAT
Found at i:23298 original size:12 final size:12
Alignment explanation
Indices: 23283--23307 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23273 AAATTAAAAT
23283 ATTTTAAAATTA
1 ATTTTAAAATTA
23295 ATTTTAAAATTA
1 ATTTTAAAATTA
23307 A
1 A
23308 CCATACTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTTAAAATTA
Found at i:25246 original size:27 final size:26
Alignment explanation
Indices: 25203--25255 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
25193 GATGTCTAAA
25203 TTATTTTTTAAAATTTAAATA-TATT
1 TTATTTTTTAAAATTTAAATACTATT
*
25228 TTATTTTAATTAAATTTTAAATACTATT
1 TTATTTT--TTAAAATTTAAATACTATT
25256 AATTAAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
27 13 0.54
28 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (26 bp):
TTATTTTTTAAAATTTAAATACTATT
Found at i:26498 original size:26 final size:26
Alignment explanation
Indices: 26462--26511 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
26452 AATAGGGACC
*
26462 AAAACAAACTCAAGTACCAAATTGGA
1 AAAAAAAACTCAAGTACCAAATTGGA
* *
26488 AAAAAAAACTCAGGTGCCAAATTG
1 AAAAAAAACTCAAGTACCAAATTG
26512 AACATTGGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.18, G:0.14, T:0.16
Consensus pattern (26 bp):
AAAAAAAACTCAAGTACCAAATTGGA
Found at i:26527 original size:57 final size:57
Alignment explanation
Indices: 26466--26648 Score: 176
Period size: 57 Copynumber: 3.2 Consensus size: 57
26456 GGGACCAAAA
*
26466 CAAACTCAAGTACCAAATTGGAAAAAAAAACTCAGGTGCCAAATTGAACATTGGAA-T
1 CAAACTCAAGTACCAAATTGGAAAAAAAAACTCAGGTACCAAATTGAACA-TGGAAGT
** ** **
26523 CAAACTCAAGTACCAAATCAGAAAGGAAAACTTGGGTACCAAATT-AGACATGGAAGT
1 CAAACTCAAGTACCAAATTGGAAAAAAAAACTCAGGTACCAAATTGA-ACATGGAAGT
* * * * * * *
26580 TAAATTCAGGTACAAAATTGG-AAAAAAAGCTCAGGTACTAAATTGAGCAAT-GAAGT
1 CAAACTCAAGTACCAAATTGGAAAAAAAAACTCAGGTACCAAATTGAAC-ATGGAAGT
*
26636 CAAACTCAGGTAC
1 CAAACTCAAGTAC
26649 TAGATAGTAT
Statistics
Matches: 100, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
56 40 0.40
57 60 0.60
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (57 bp):
CAAACTCAAGTACCAAATTGGAAAAAAAAACTCAGGTACCAAATTGAACATGGAAGT
Found at i:26700 original size:33 final size:33
Alignment explanation
Indices: 26656--26728 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
26646 TACTAGATAG
* *
26656 TATATTGACCTTATTTTTTAATGAAATATAACT
1 TATATTAACCTTATTTTTTAATGAAAGATAACT
26689 TATATTAACCTTATTTTTTAATGAAAGATAACT
1 TATATTAACCTTATTTTTTAATGAAAGATAACT
26722 TATATTA
1 TATATTA
26729 GTATAATCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.48
Consensus pattern (33 bp):
TATATTAACCTTATTTTTTAATGAAAGATAACT
Found at i:34230 original size:14 final size:14
Alignment explanation
Indices: 34213--34248 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
34203 TTGTCTTTCT
34213 ATTTTTATAATATC
1 ATTTTTATAATATC
34227 ATTTTTATAATATC
1 ATTTTTATAATATC
34241 ATTGTTTA
1 ATT-TTTA
34249 GTCCAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (14 bp):
ATTTTTATAATATC
Found at i:36540 original size:282 final size:282
Alignment explanation
Indices: 36033--36589 Score: 780
Period size: 282 Copynumber: 2.0 Consensus size: 282
36023 TTGAATTCAG
* * * *
36033 TTTGATTACACTGTTTTATAAAATAGATTTTATCATTTGAGGATTGGAATCCATAATCATTGATG
1 TTTGATTAAACTCTTTTATAAAATAGATTTTATCATTTGAGGACTGGAATCAATAATCATTGATG
* * * * * *
36098 TTGTATTATCAAATTTAGTTGAGTTTTAACTCGTTGTCTTCTAAGTGGAAAAGGTTAGATTGCAT
66 TTATATCATCAAATTTAATCGAGTTTTAACTCGGTGTCTTCTAAGTGGAAAAGGTTAGATCGCAT
* ** * * * * *
36163 CAATAAGCTTTGTAGATGTTAATTGTATATAATCATTTTTTTTGTTGAAGTGTAAGATTAATGGA
131 CAATAAGCTTCGTAGATGTTAATCATATAAAACCATTTTTTTTATTAAACTGTAAGATTAATGGA
*
36228 ATTGTTGGCTCTAACATTACATGATGTCTAATAAGATCAATATACTGGTTTTGTCATGCATGTTC
196 ATTGTTGGCTCTAAAATTACATGATGTCTAATAAGATCAATATACTGGTTTTGTCATGCATGTTC
*
36293 TTTACAAAGTAGTAAGTTGCAT
261 TTTACAAACTAGTAAGTTGCAT
*
36315 TTTGATTAAACTCTTTTATGAAATAGATTTGT-TCATTTGAGGACTGGAATCAATAATCATTGAT
1 TTTGATTAAACTCTTTTATAAAATAGATTT-TATCATTTGAGGACTGGAATCAATAATCATTGAT
* * *
36379 GTTATGTCATCAAATTTAATCGAGTTTTAACTTGGTGTCTT-TCAAGTGG-AAAGGTTTGATCGC
65 GTTATATCATCAAATTTAATCGAGTTTTAACTCGGTGTCTTCT-AAGTGGAAAAGGTTAGATCGC
36442 ATCAATAAGCTTCGTAGATGTTAATCATATAAAACCATTTTTATTTATTAAACTGTAAGATTAAT
129 ATCAATAAGCTTCGTAGATGTTAATCATATAAAACCATTTTT-TTTATTAAACTGTAAGATTAAT
** * * *
36507 GGAATTGTTGGCTCTAAAATTGTAT-ACTGTCTAATAAGATCAATGTACTGGTTTTTTCATGTAT
193 GGAATTGTTGGCTCTAAAATTACATGA-TGTCTAATAAGATCAATATACTGGTTTTGTCATGCAT
*
36571 TTTCTTTACAAACTAGTAA
257 GTTCTTTACAAACTAGTAA
36590 AGCTGGATGT
Statistics
Matches: 241, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
281 51 0.21
282 189 0.78
283 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (282 bp):
TTTGATTAAACTCTTTTATAAAATAGATTTTATCATTTGAGGACTGGAATCAATAATCATTGATG
TTATATCATCAAATTTAATCGAGTTTTAACTCGGTGTCTTCTAAGTGGAAAAGGTTAGATCGCAT
CAATAAGCTTCGTAGATGTTAATCATATAAAACCATTTTTTTTATTAAACTGTAAGATTAATGGA
ATTGTTGGCTCTAAAATTACATGATGTCTAATAAGATCAATATACTGGTTTTGTCATGCATGTTC
TTTACAAACTAGTAAGTTGCAT
Found at i:51417 original size:18 final size:17
Alignment explanation
Indices: 51387--51422 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
51377 CTTGATATTT
51387 TTTTGTGAAGGAGGAGG
1 TTTTGTGAAGGAGGAGG
*
51404 TTTTGATGATGGAGGAGG
1 TTTTG-TGAAGGAGGAGG
51422 T
1 T
51423 AAAAGAGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33
Consensus pattern (17 bp):
TTTTGTGAAGGAGGAGG
Found at i:70308 original size:62 final size:62
Alignment explanation
Indices: 70233--70357 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
70223 GATTTTAACA
70233 GTTGAGCGACCTAAATAAAAAATTCAAATAATTAATTAACCTTTTTGTGACTTGTTGAAATT
1 GTTGAGCGACCTAAATAAAAAATTCAAATAATTAATTAACCTTTTTGTGACTTGTTGAAATT
70295 GTTGAGCGACCTAAATAAAAAATTCAAATAATTAATTAACCTTTTTGTGACTTGTTGAAATT
1 GTTGAGCGACCTAAATAAAAAATTCAAATAATTAATTAACCTTTTTGTGACTTGTTGAAATT
70357 G
1 G
70358 AATGATCAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (62 bp):
GTTGAGCGACCTAAATAAAAAATTCAAATAATTAATTAACCTTTTTGTGACTTGTTGAAATT
Found at i:70523 original size:26 final size:26
Alignment explanation
Indices: 70472--70524 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
70462 CCAGCAAGGA
*
70472 TTGGTAAAGGGTAAATATTTTATTTT
1 TTGGTAAAGGGTAAATATATTATTTT
70498 TTGGTCAAA-GGTAAATATA--ATTTT
1 TTGGT-AAAGGGTAAATATATTATTTT
70522 TTG
1 TTG
70525 TCAAATTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 8 0.32
26 14 0.56
27 3 0.12
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (26 bp):
TTGGTAAAGGGTAAATATATTATTTT
Done.