Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008760.1 Kokia drynarioides strain JFW-HI SEQ_123443, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2247
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36


Found at i:155 original size:22 final size:22

Alignment explanation


    Indices: 127--185  Score: 100
    Period size: 22  Copynumber: 2.7  Consensus size: 22

        117 ATTAGAGTAA

                               ** 
        127 TCATCTCTAATTTCATCATGGT
          1 TCATCTCTAATTTCATCATAAT

                                  
        149 TCATCTCTAATTTCATCATAAT
          1 TCATCTCTAATTTCATCATAAT

                           
        171 TCATCTCTAATTTCA
          1 TCATCTCTAATTTCA

        186 ACAGATTCCT


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   35  1.00

ACGTcount: A:0.27, C:0.24, G:0.03, T:0.46


Consensus pattern (22 bp):   
TCATCTCTAATTTCATCATAAT

Found at i:165 original size:12 final size:12

Alignment explanation


    Indices: 127--185  Score: 54
    Period size: 12  Copynumber: 5.2  Consensus size: 12

        117 ATTAGAGTAA

                        
        127 TCATCTCTAATT
          1 TCATCTCTAATT

                  *  ** 
        139 TCATC-AT-GGT
          1 TCATCTCTAATT

                        
        149 TCATCTCTAATT
          1 TCATCTCTAATT

                  *     
        161 TCATC-ATAA-T
          1 TCATCTCTAATT

                        
        171 TCATCTCTAATT
          1 TCATCTCTAATT

               
        183 TCA
          1 TCA

        186 ACAGATTCCT


Statistics
Matches: 35,  Mismatches: 8, Indels: 8
        0.69            0.16        0.16

Matches are distributed among these distances:
  10   12  0.34
  11    8  0.23
  12   15  0.43

ACGTcount: A:0.27, C:0.24, G:0.03, T:0.46


Consensus pattern (12 bp):   
TCATCTCTAATT
Done.