genome.fa.s8764.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008764.1 Kokia drynarioides strain JFW-HI SEQ_123447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  278447

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13107--13173	33	2.0	33	100	0	134	49	11	29	8	1.70
18040--18650	93	6.5	93	76	10	409	35	16	21	26	1.94
18213--18351	49	3.0	47	67	13	108	35	15	21	27	1.94
17998--18650	190	3.4	191	82	4	673	34	16	21	27	1.95
18187--18851	99	6.8	99	74	10	446	35	16	21	26	1.94
18203--18841	190	3.3	190	82	5	586	35	15	21	26	1.94
27889--27913	11	2.3	11	100	0	50	40	32	16	12	1.84
27962--27995	18	1.9	18	88	5	52	67	5	8	17	1.37
28417--28458	21	2.0	20	82	13	50	7	28	0	64	1.20
33393--33426	14	2.4	15	85	14	54	29	11	8	50	1.69
33401--33428	14	2.0	14	100	0	56	28	14	7	50	1.69
34645--34691	25	1.9	24	87	12	69	19	10	12	57	1.64
36995--37034	15	2.5	15	88	8	53	25	12	5	57	1.55
37063--37128	24	2.7	24	77	11	71	22	6	1	69	1.19
37087--37135	4	12.8	4	79	12	50	20	2	2	75	1.00
37088--37138	19	2.7	18	77	19	59	19	1	3	74	1.07
37063--37165	23	4.4	23	76	11	68	16	3	3	75	1.10
37133--37163	11	2.8	11	95	0	53	0	0	9	90	0.46
37133--37163	16	2.0	15	93	6	53	0	0	9	90	0.46
37303--37348	24	2.0	23	82	4	56	21	10	6	60	1.52
49848--50003	80	2.0	79	93	1	267	30	14	19	35	1.92
49966--50123	79	2.0	78	91	1	253	27	13	20	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50358--50407	27	1.9	27	84	8	68	56	20	0	24	1.43
50540--50672	39	2.9	46	72	20	118	52	13	9	24	1.69
53318--53500	30	6.1	29	84	6	213	42	22	2	32	1.68
53317--53500	90	2.1	90	84	7	241	42	22	2	32	1.68
65152--65267	50	2.3	50	82	2	126	38	21	22	17	1.93
65182--65279	50	2.0	50	89	0	151	36	19	26	17	1.94
65335--65527	80	2.4	80	96	1	352	32	25	17	23	1.97
65335--65553	40	5.5	40	88	1	305	32	26	16	24	1.96
65346--65586	120	2.0	120	82	5	292	32	24	17	24	1.97
65582--65741	50	3.2	50	93	1	268	40	20	17	22	1.92
67481--67651	30	5.7	30	80	8	186	42	22	4	30	1.72
67481--67651	61	2.8	60	86	4	220	42	22	4	30	1.72
69141--69165	10	2.5	10	100	0	50	40	0	12	48	1.40
88616--88658	11	3.8	12	84	9	54	81	0	18	0	0.69
94763--95111	187	1.9	187	98	0	680	29	16	13	40	1.87
102037--102062	2	13.0	2	100	0	52	50	0	0	50	1.00
113182--113214	8	4.2	8	92	3	50	45	0	39	15	1.46
121488--121531	21	2.1	21	82	0	52	11	15	6	65	1.44
121515--121549	17	2.0	18	94	5	63	5	11	8	74	1.22
124440--124483	22	2.0	22	100	0	88	22	13	18	45	1.84
128123--128200	39	2.0	39	92	5	131	17	14	25	42	1.87
133036--133094	21	3.0	21	76	9	54	11	13	5	69	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152340--152389	6	8.5	6	84	8	59	82	2	16	0	0.77
157276--157402	65	2.0	65	95	0	227	22	14	7	55	1.64
167757--167796	21	1.9	21	85	10	55	40	10	0	50	1.36
177354--177387	18	1.9	17	88	5	50	23	11	8	55	1.63
184690--184756	15	4.3	15	78	16	57	67	1	31	0	1.00
188577--188625	23	2.1	23	88	0	71	51	8	8	32	1.61
190513--190687	30	5.9	29	71	17	110	33	4	24	37	1.76
190580--190706	59	2.1	59	85	4	166	33	6	23	36	1.80
192375--193287	124	7.5	115	77	10	546	22	19	16	40	1.91
192488--193483	124	8.2	124	84	4	1252	22	19	16	40	1.91
192874--192967	48	2.0	48	85	4	127	24	22	13	39	1.90
192998--193090	48	1.9	48	91	4	152	22	21	13	41	1.88
192322--193485	371	3.2	369	84	4	1383	22	19	17	40	1.91
193190--193396	109	1.9	109	91	0	342	21	19	19	39	1.92
196612--196654	21	2.0	21	90	0	68	39	13	13	32	1.85
201373--201398	12	2.2	12	100	0	52	15	23	19	42	1.89
205261--205483	30	7.5	30	71	9	127	35	6	22	35	1.80
205254--205478	60	3.8	60	74	9	167	37	6	21	34	1.80
205419--205508	30	3.0	30	76	9	103	38	4	18	37	1.71
209213--209279	20	3.2	21	72	10	57	44	8	5	40	1.60
213561--213635	25	3.0	25	98	1	143	40	0	0	60	0.97
213569--213628	19	3.1	19	79	13	59	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214440--214468	6	4.8	6	100	0	58	0	13	0	86	0.58
217577--217650	20	3.7	20	92	3	89	29	9	31	29	1.89
228237--228280	14	2.9	14	86	10	52	47	0	36	15	1.46
229082--229149	21	3.1	21	77	8	66	54	10	23	11	1.67
240928--240977	7	7.0	7	93	2	82	46	0	0	54	1.00
241453--241492	2	20.0	2	100	0	80	50	0	0	50	1.00
249410--249434	5	5.0	5	100	0	50	60	0	0	40	0.97
250857--250908	24	2.2	24	92	0	86	28	28	9	32	1.89
263547--263726	95	1.9	95	82	2	227	28	22	21	27	1.99
277105--277145	21	2.0	21	85	0	55	63	7	24	4	1.40

Tables:   1

The End!