Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008771.1 Kokia drynarioides strain JFW-HI SEQ_123454, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7975
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:5866 original size:31 final size:31

Alignment explanation


    Indices: 5828--5889  Score: 81
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       5818 CTAATCCACT

                                            
       5828 GTGACTTAAAT-AAAACCTTTAAAATACTTCA
          1 GTGACTTAAATGAAAA-CTTTAAAATACTTCA

                    *           *     *    
       5859 GTGACTTAGATGAAAACTTTCAAATAGTTCA
          1 GTGACTTAAATGAAAACTTTAAAATACTTCA

       5890 ACGATCATTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  31   23  0.85
  32    4  0.15

ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32


Consensus pattern (31 bp):   
GTGACTTAAATGAAAACTTTAAAATACTTCA
Done.