Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008773.1 Kokia drynarioides strain JFW-HI SEQ_123456, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3334
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34


Found at i:321 original size:25 final size:25

Alignment explanation


    Indices: 262--324  Score: 67
    Period size: 24  Copynumber: 2.6  Consensus size: 25

        252 ATATGAATTA

                       *             
        262 TTATAATAAAATTTATTTAAATATT
          1 TTATAATAAAAATTATTTAAATATT

            **  *                     
        287 GCATGA-AAAAATTATTTAAATATAT
          1 TTATAATAAAAATTATTTAAATAT-T

                          
        312 TTAT-ATAAAAATT
          1 TTATAATAAAAATT

        325 TTAATATGCA


Statistics
Matches: 30,  Mismatches: 6, Indels: 4
        0.75            0.15        0.10

Matches are distributed among these distances:
  24   17  0.57
  25   13  0.43

ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44


Consensus pattern (25 bp):   
TTATAATAAAAATTATTTAAATATT
Done.