Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008774.1 Kokia drynarioides strain JFW-HI SEQ_123457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4132
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32


Found at i:3195 original size:91 final size:91

Alignment explanation


    Indices: 3111--3307  Score: 394
    Period size: 91  Copynumber: 2.2  Consensus size: 91

       3101 GCATTCGTCT

                                                                             
       3111 TTATCGTGGAAGAATGTACAAAAAGAAACGGAAAAAAAAAAAGAGAAATTTATTGGTGGAGCTAT
          1 TTATCGTGGAAGAATGTACAAAAAGAAACGGAAAAAAAAAAAGAGAAATTTATTGGTGGAGCTAT

                                      
       3176 AAAGCTAATGGTAGAAGCATTCATTG
         66 AAAGCTAATGGTAGAAGCATTCATTG

                                                                             
       3202 TTATCGTGGAAGAATGTACAAAAAGAAACGGAAAAAAAAAAAGAGAAATTTATTGGTGGAGCTAT
          1 TTATCGTGGAAGAATGTACAAAAAGAAACGGAAAAAAAAAAAGAGAAATTTATTGGTGGAGCTAT

                                      
       3267 AAAGCTAATGGTAGAAGCATTCATTG
         66 AAAGCTAATGGTAGAAGCATTCATTG

                           
       3293 TTATCGTGGAAGAAT
          1 TTATCGTGGAAGAAT

       3308 ATGTATATTT


Statistics
Matches: 106,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  91  106  1.00

ACGTcount: A:0.45, C:0.08, G:0.23, T:0.24


Consensus pattern (91 bp):   
TTATCGTGGAAGAATGTACAAAAAGAAACGGAAAAAAAAAAAGAGAAATTTATTGGTGGAGCTAT
AAAGCTAATGGTAGAAGCATTCATTG
Done.