Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008776.1 Kokia drynarioides strain JFW-HI SEQ_123459, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10674
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:3071 original size:63 final size:63

Alignment explanation


    Indices: 2995--3121  Score: 227
    Period size: 63  Copynumber: 2.0  Consensus size: 63

       2985 TGTATTGTGG

                                                             *             
       2995 CAGTGATAATATGGTTGTTGACGAAATGAACCATTGTTGAGTTCAAATGTCAATATTGGCTCC
          1 CAGTGATAATATGGTTGTTGACGAAATGAACCATTGTTGAGTTCAAATGGCAATATTGGCTCC

                    *                       *                              
       3058 CAGTGATATTATGGTTGTTGACGAAATGAACCTTTGTTGAGTTCAAATGGCAATATTGGCTCC
          1 CAGTGATAATATGGTTGTTGACGAAATGAACCATTGTTGAGTTCAAATGGCAATATTGGCTCC

             
       3121 C
          1 C

       3122 GCATATGACA


Statistics
Matches: 61,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  63   61  1.00

ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34


Consensus pattern (63 bp):   
CAGTGATAATATGGTTGTTGACGAAATGAACCATTGTTGAGTTCAAATGGCAATATTGGCTCC

Found at i:8223 original size:21 final size:20

Alignment explanation


    Indices: 8198--8243  Score: 65
    Period size: 21  Copynumber: 2.2  Consensus size: 20

       8188 ACTGAAGTGG

                            *    
       8198 AAAATGTTGAAATAATGAGAA
          1 AAAATGTTGAAA-AATAAGAA

                               *
       8219 AAAATGTTGAAAAATAAGAG
          1 AAAATGTTGAAAAATAAGAA

                 
       8239 AAAAT
          1 AAAAT

       8244 CTGATTTATC


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  20   11  0.48
  21   12  0.52

ACGTcount: A:0.61, C:0.00, G:0.17, T:0.22


Consensus pattern (20 bp):   
AAAATGTTGAAAAATAAGAA
Done.