Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008777.1 Kokia drynarioides strain JFW-HI SEQ_123460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3901
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39


Found at i:261 original size:21 final size:20

Alignment explanation


    Indices: 237--275  Score: 60
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        227 TGTAATTCAA

                   *             
        237 ATTTTTTTATATATTTTTAAG
          1 ATTTTTTAATA-ATTTTTAAG

                              
        258 ATTTTTTAATAATTTTTA
          1 ATTTTTTAATAATTTTTA

        276 TATAATTATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    7  0.41
  21   10  0.59

ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67


Consensus pattern (20 bp):   
ATTTTTTAATAATTTTTAAG
Done.