Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008781.1 Kokia drynarioides strain JFW-HI SEQ_123464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38


Found at i:563 original size:9 final size:9

Alignment explanation


    Indices: 549--581  Score: 57
    Period size: 9  Copynumber: 3.6  Consensus size: 9

        539 TTTTATAACA

                     
        549 TTTTAAAAT
          1 TTTTAAAAT

                     
        558 TTTTAAAAT
          1 TTTTAAAAT

                     
        567 TTTTAAAAT
          1 TTTTAAAAT

                  
        576 TATTTA
          1 T-TTTA

        582 TATTTTTTAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   9   19  0.83
  10    4  0.17

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (9 bp):   
TTTTAAAAT
Done.