Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008782.1 Kokia drynarioides strain JFW-HI SEQ_123465, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4763
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35

Warning! 4 characters in sequence are not A, C, G, or T


Found at i:4163 original size:13 final size:12

Alignment explanation


    Indices: 4142--4175  Score: 52
    Period size: 13  Copynumber: 2.8  Consensus size: 12

       4132 TTTTTATTTC

                        
       4142 TTTA-TTTTCCT
          1 TTTATTTTTCCT

                         
       4153 TTTATTCTTTCCT
          1 TTTATT-TTTCCT

                      
       4166 TTTATTTTTC
          1 TTTATTTTTC

       4176 TCCATTCTCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  11    4  0.19
  12    5  0.24
  13   12  0.57

ACGTcount: A:0.09, C:0.18, G:0.00, T:0.74


Consensus pattern (12 bp):   
TTTATTTTTCCT

Found at i:4168 original size:19 final size:19

Alignment explanation


    Indices: 4127--4162  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       4117 CAATTTAATT

                 *             
       4127 TTTTCTTTTTATTTCTTTA
          1 TTTTCCTTTTATTTCTTTA

                              
       4146 TTTTCCTTTTA-TTCTTT
          1 TTTTCCTTTTATTTCTTT

       4163 CCTTTTATTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    6  0.38
  19   10  0.62

ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78


Consensus pattern (19 bp):   
TTTTCCTTTTATTTCTTTA
Done.