Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008795.1 Kokia drynarioides strain JFW-HI SEQ_123478, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1875
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36


Found at i:1265 original size:137 final size:134

Alignment explanation


    Indices: 1057--1341  Score: 453
    Period size: 134  Copynumber: 2.1  Consensus size: 134

       1047 GTAAATAAAT

                               *             *                  *            
       1057 AATTTTTATAATTTTTTAATTGGATTGAAATTCTATATATAATTCACATCAATTCACTAAAACTT
          1 AATTTTTATAATTTTTTAACTGGATTGAAATTCGATATATAATTCACATCAAATCACTAAAACTT

                                                                   *         
       1122 TATAAATAATAAATATAAATACACAAATATATAATAAATTTATATAACTGTGTGCTTACATTGCT
         66 TAT--A-AATAAATATAAATACACAAATATATAATAAATTTATATAACTGTGTGCCTACATTGCT

                   
       1187 TTGAGAC
        128 TTGAGAC

                                              *                           *  
       1194 AATTTTTATAATTTTTTAACTGGATTGAAATTCGGTATATAATTCACATCAAATCACTAAAATTT
          1 AATTTTTATAATTTTTTAACTGGATTGAAATTCGATATATAATTCACATCAAATCACTAAAACTT

                                                                             
       1259 TATAAATAAATATAAATACACAAATATATAATAAATTTATATAACTGTGTGCCTACATTGCTTTG
         66 TATAAATAAATATAAATACACAAATATATAATAAATTTATATAACTGTGTGCCTACATTGCTTTG

            **  
       1324 TTAC
        131 AGAC

              *      *    
       1328 AACTTTTATTATTT
          1 AATTTTTATAATTT

       1342 GTTATTATAG


Statistics
Matches: 138,  Mismatches: 10, Indels: 3
        0.91            0.07        0.02

Matches are distributed among these distances:
 134   74  0.54
 135    1  0.01
 137   63  0.46

ACGTcount: A:0.41, C:0.11, G:0.07, T:0.42


Consensus pattern (134 bp):   
AATTTTTATAATTTTTTAACTGGATTGAAATTCGATATATAATTCACATCAAATCACTAAAACTT
TATAAATAAATATAAATACACAAATATATAATAAATTTATATAACTGTGTGCCTACATTGCTTTG
AGAC
Done.