Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008796.1 Kokia drynarioides strain JFW-HI SEQ_123479, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4356
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35


Found at i:4297 original size:30 final size:30

Alignment explanation


    Indices: 4261--4325  Score: 112
    Period size: 30  Copynumber: 2.2  Consensus size: 30

       4251 TAACTTAACA

                    *  *                  
       4261 AACAAATGTCTTTAAAATAATAACAAAATT
          1 AACAAATGCCTCTAAAATAATAACAAAATT

                                          
       4291 AACAAATGCCTCTAAAATAATAACAAAATT
          1 AACAAATGCCTCTAAAATAATAACAAAATT

                 
       4321 AACAA
          1 AACAA

       4326 TAAAATAAGT


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  30   33  1.00

ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25


Consensus pattern (30 bp):   
AACAAATGCCTCTAAAATAATAACAAAATT
Done.