Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000088.1 Kokia drynarioides strain JFW-HI SEQ_110714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 938

Length: 1564
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30


Found at i:453 original size:45 final size:45

Alignment explanation


    Indices: 397--525  Score: 145
    Period size: 45  Copynumber: 2.9  Consensus size: 45

        387 TAGAGTATCG

                *            *                           *
        397 CGATAGCTCGTCAAACTCAGCCTGATATCCTT-CCTTTGAGTATTG
          1 CGATGGCTCGTCAAACTGAGCCTGATATCCTTGCC-TTGAGTATTA

                            *       *     *   *           
        442 C-AGTGGCTCGTCAAATTGAGCCTAATATCATTGGCTTGAGTATTA
          1 CGA-TGGCTCGTCAAACTGAGCCTGATATCCTTGCCTTGAGTATTA

                                *            *     
        487 CGATGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 CGATGGCTCGTCAAACTGAGCCTGATATCCTTGCCTTGA

        526 TGAGCTATGC


Statistics
Matches: 70,  Mismatches: 11, Indels: 6
        0.80            0.13        0.07

Matches are distributed among these distances:
  44    1  0.01
  45   67  0.96
  46    2  0.03

ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32


Consensus pattern (45 bp):   
CGATGGCTCGTCAAACTGAGCCTGATATCCTTGCCTTGAGTATTA
Done.