Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008802.1 Kokia drynarioides strain JFW-HI SEQ_123485, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6313
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37


Found at i:5373 original size:17 final size:18

Alignment explanation


    Indices: 5346--5379  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       5336 GCTTCAGGGA

                              
       5346 ATATGCCAAAAGCTTCAC
          1 ATATGCCAAAAGCTTCAC

                       *     
       5364 ATAT-CCAAAATCTTCA
          1 ATATGCCAAAAGCTTCA

       5380 TAACTGTTAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   11  0.73
  18    4  0.27

ACGTcount: A:0.41, C:0.26, G:0.06, T:0.26


Consensus pattern (18 bp):   
ATATGCCAAAAGCTTCAC
Done.