Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008815.1 Kokia drynarioides strain JFW-HI SEQ_123499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2547
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32


Found at i:1495 original size:15 final size:15

Alignment explanation


    Indices: 1477--1510  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1467 CTCAGCAGAC

                           
       1477 TCTTTATCAGCATCT
          1 TCTTTATCAGCATCT

                 *     *   
       1492 TCTTTCTCAGCGTCT
          1 TCTTTATCAGCATCT

                
       1507 TCTT
          1 TCTT

       1511 CCTCATCCTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.12, C:0.29, G:0.09, T:0.50


Consensus pattern (15 bp):   
TCTTTATCAGCATCT
Done.