Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008817.1 Kokia drynarioides strain JFW-HI SEQ_123501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5504
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:1349 original size:30 final size:29

Alignment explanation


    Indices: 1310--1418  Score: 141
    Period size: 30  Copynumber: 3.7  Consensus size: 29

       1300 CTATTTTAAC

                                          
       1310 CCCT-GAACTTTCTAAAAATTATGTTTTGG
          1 CCCTCGAACTTT-TAAAAATTATGTTTTGG

                 *      **                
       1339 CCCTCAAACTTCCCAAAAATTATGTTTTGG
          1 CCCTCGAACTT-TTAAAAATTATGTTTTGG

                                           
       1369 CTCC-CGAACTTTTCAAAAATTATGTTTTGG
          1 C-CCTCGAACTTTT-AAAAATTATGTTTTGG

                                
       1399 CCCTCGAACTTTTAAAAATT
          1 CCCTCGAACTTTTAAAAATT

       1419 CAAATTTGGC


Statistics
Matches: 69,  Mismatches: 6, Indels: 10
        0.81            0.07        0.12

Matches are distributed among these distances:
  29   13  0.19
  30   54  0.78
  31    2  0.03

ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38


Consensus pattern (29 bp):   
CCCTCGAACTTTTAAAAATTATGTTTTGG
Done.