Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008822.1 Kokia drynarioides strain JFW-HI SEQ_123506, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4019
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35


Found at i:2842 original size:11 final size:12

Alignment explanation


    Indices: 2825--2857  Score: 50
    Period size: 11  Copynumber: 2.8  Consensus size: 12

       2815 CTTCTAGTTA

                        
       2825 ATTATTTTTATT
          1 ATTATTTTTATT

                     *  
       2837 -TTATTTTTTTT
          1 ATTATTTTTATT

                      
       2848 ATTATTTTTA
          1 ATTATTTTTA

       2858 AAAAATAGTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  11   10  0.56
  12    8  0.44

ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79


Consensus pattern (12 bp):   
ATTATTTTTATT
Done.