Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008824.1 Kokia drynarioides strain JFW-HI SEQ_123508, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7976
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32


Found at i:800 original size:21 final size:21

Alignment explanation


    Indices: 776--818  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        766 CATCTCAACC

                         *       
        776 TGTTCGTGATGCGTAACCACA
          1 TGTTCGTGATGCGCAACCACA

                                 
        797 TGTTCGTGATGCGCAACCACA
          1 TGTTCGTGATGCGCAACCACA

             
        818 T
          1 T

        819 TTAAAGGGCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28


Consensus pattern (21 bp):   
TGTTCGTGATGCGCAACCACA
Done.