Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008830.1 Kokia drynarioides strain JFW-HI SEQ_123514, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3665
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:570 original size:12 final size:12

Alignment explanation


    Indices: 553--580  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

        543 TTTTTATTTT

                        
        553 TTTCTTTTTGGA
          1 TTTCTTTTTGGA

                        
        565 TTTCTTTTTGGA
          1 TTTCTTTTTGGA

                
        577 TTTC
          1 TTTC

        581 ATATTTTTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.07, C:0.11, G:0.14, T:0.68


Consensus pattern (12 bp):   
TTTCTTTTTGGA
Done.