Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008834.1 Kokia drynarioides strain JFW-HI SEQ_123518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4605
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:2961 original size:15 final size:16

Alignment explanation


    Indices: 2937--2970  Score: 52
    Period size: 15  Copynumber: 2.2  Consensus size: 16

       2927 AATATTTTAT

                       *    
       2937 AAATTCCTAAATCCTA
          1 AAATTCCTAAACCCTA

                            
       2953 AAATT-CTAAACCCTA
          1 AAATTCCTAAACCCTA

               
       2968 AAA
          1 AAA

       2971 AACTTTAGAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15   12  0.71
  16    5  0.29

ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26


Consensus pattern (16 bp):   
AAATTCCTAAACCCTA
Done.