Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008842.1 Kokia drynarioides strain JFW-HI SEQ_123528, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10395
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32


Found at i:1072 original size:13 final size:13

Alignment explanation


    Indices: 1051--1080  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       1041 GTCAATGCAA

                         
       1051 TCAAAGTTAAATG
          1 TCAAAGTTAAATG

                *        
       1064 TCAAGGTTAAATG
          1 TCAAAGTTAAATG

                
       1077 TCAA
          1 TCAA

       1081 TATACTTAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30


Consensus pattern (13 bp):   
TCAAAGTTAAATG

Found at i:5139 original size:33 final size:33

Alignment explanation


    Indices: 5097--5163  Score: 125
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       5087 ACTGGGCCTT

                                             
       5097 TAGAAGGAGGAGGTGTTGTGGTTGGAACCCTAG
          1 TAGAAGGAGGAGGTGTTGTGGTTGGAACCCTAG

                      *                      
       5130 TAGAAGGAGGTGGTGTTGTGGTTGGAACCCTAG
          1 TAGAAGGAGGAGGTGTTGTGGTTGGAACCCTAG

             
       5163 T
          1 T

       5164 TGTCGAGGTG


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.22, C:0.09, G:0.42, T:0.27


Consensus pattern (33 bp):   
TAGAAGGAGGAGGTGTTGTGGTTGGAACCCTAG

Done.