Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008844.1 Kokia drynarioides strain JFW-HI SEQ_123530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10798
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:1962 original size:43 final size:43

Alignment explanation


    Indices: 1914--1996  Score: 114
    Period size: 43  Copynumber: 1.9  Consensus size: 43

       1904 GTTTAACCGA

                        *       *                       
       1914 TACAAGTCAAACTCTATCTTTGAAGT-AGCATCGCAAATTTCGT
          1 TACAAGTCAAACACTATCTTCGAA-TCAGCATCGCAAATTTCGT

                    *                       *       
       1957 TACAAGTCGAACACTATCTTCGAATCAGCATCTCAAATTT
          1 TACAAGTCAAACACTATCTTCGAATCAGCATCGCAAATTT

       1997 GGTTTGGTTT


Statistics
Matches: 35,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  42    1  0.03
  43   34  0.97

ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31


Consensus pattern (43 bp):   
TACAAGTCAAACACTATCTTCGAATCAGCATCGCAAATTTCGT
Done.