Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008848.1 Kokia drynarioides strain JFW-HI SEQ_123534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 995

Length: 1659
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24


Found at i:704 original size:22 final size:21

Alignment explanation


    Indices: 663--705  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        653 CCCAAACAAA

                           *     
        663 TAGAGGAAAAATACAGGCGAT
          1 TAGAGGAAAAATACACGCGAT

                                   
        684 TAGAGGAGAAAAT-CGACGCGAT
          1 TAGAGGA-AAAATAC-ACGCGAT

        706 GCAGGGAGTT


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  21    8  0.42
  22   11  0.58

ACGTcount: A:0.44, C:0.12, G:0.30, T:0.14


Consensus pattern (21 bp):   
TAGAGGAAAAATACACGCGAT
Done.