Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008849.1 Kokia drynarioides strain JFW-HI SEQ_123535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 809

Length: 1349
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Found at i:738 original size:25 final size:25

Alignment explanation


    Indices: 709--756  Score: 78
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        699 TGAAGCTCTT

                 *        *          
        709 ATAACCTGTTGCCTCATTAAAAATC
          1 ATAACATGTTGCCTAATTAAAAATC

                                   
        734 ATAACATGTTGCCTAATTAAAAA
          1 ATAACATGTTGCCTAATTAAAAA

        757 CCTTATCAGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   21  1.00

ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31


Consensus pattern (25 bp):   
ATAACATGTTGCCTAATTAAAAATC
Done.