Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000885.1 Kokia drynarioides strain JFW-HI SEQ_112008, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2102
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37


Found at i:1882 original size:23 final size:23

Alignment explanation


    Indices: 1852--1973  Score: 112
    Period size: 23  Copynumber: 5.3  Consensus size: 23

       1842 ACTGGGGAAA

                                   
       1852 CAGTAAGCACACACAGTGC-AAT
          1 CAGTAAGCACACACAGTGCAAAT

                                    
       1874 CCAGTAAGCACACACAGTGC-AAT
          1 -CAGTAAGCACACACAGTGCAAAT

                 *  *    *  *      
       1897 CAGTAGGCGCACATAGCGCAAAT
          1 CAGTAAGCACACACAGTGCAAAT

                          *          
       1920 CAGT-AGACACACAAAGTGCGAAA-
          1 CAGTAAG-CACACACAGTGC-AAAT

                                     
       1943 CAGTAAGCACACGA-AGTGCGAAA-
          1 CAGTAAGCACAC-ACAGTGC-AAAT

                    
       1966 CAGTAAGC
          1 CAGTAAGC

       1974 GCGCTAGCGT


Statistics
Matches: 86,  Mismatches: 8, Indels: 10
        0.83            0.08        0.10

Matches are distributed among these distances:
  22   16  0.19
  23   64  0.74
  24    6  0.07

ACGTcount: A:0.41, C:0.25, G:0.22, T:0.11


Consensus pattern (23 bp):   
CAGTAAGCACACACAGTGCAAAT
Done.