Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008852.1 Kokia drynarioides strain JFW-HI SEQ_123538, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1830
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37


Found at i:325 original size:14 final size:14

Alignment explanation


    Indices: 302--387  Score: 61
    Period size: 14  Copynumber: 6.0  Consensus size: 14

        292 ATATAAATTG

                          
        302 TATA-TTTTATACA
          1 TATATTTTTATACA

                          
        315 TATATTTTTATACA
          1 TATATTTTTATACA

                    *       
        329 TATATACTGTTAT--A
          1 TATAT--TTTTATACA

                 * *      
        343 TATATATATATACA
          1 TATATTTTTATACA

                       *  *  
        357 TATCAATTTTAAATCCA
          1 TAT--ATTTT-TATACA

                          
        374 TATATTTTTATACA
          1 TATATTTTTATACA

        388 AATAATATAT


Statistics
Matches: 55,  Mismatches: 10, Indels: 15
        0.69            0.12        0.19

Matches are distributed among these distances:
  12    3  0.05
  13    4  0.07
  14   28  0.51
  15    5  0.09
  16    8  0.15
  17    7  0.13

ACGTcount: A:0.40, C:0.09, G:0.01, T:0.50


Consensus pattern (14 bp):   
TATATTTTTATACA

Done.