Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008855.1 Kokia drynarioides strain JFW-HI SEQ_123541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3589
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.34


Found at i:274 original size:15 final size:15

Alignment explanation


    Indices: 227--277  Score: 50
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        217 CATATTATTT

                 *          
        227 TTTAAAAATATTTATA
          1 TTTAATAAT-TTTATA

                   *         
        243 -TTATATTATTTTAATA
          1 TTTA-ATAATTTT-ATA

                           
        259 TTTAATAATTTTATA
          1 TTTAATAATTTTATA

                
        274 TTTA
          1 TTTA

        278 TTTTTTTATG


Statistics
Matches: 29,  Mismatches: 3, Indels: 7
        0.74            0.08        0.18

Matches are distributed among these distances:
  15   13  0.45
  16   13  0.45
  17    3  0.10

ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59


Consensus pattern (15 bp):   
TTTAATAATTTTATA

Found at i:275 original size:31 final size:31

Alignment explanation


    Indices: 227--285  Score: 84
    Period size: 30  Copynumber: 1.9  Consensus size: 31

        217 CATATTATTT

                                            
        227 TTTAAAAATATTTATATTATATTATTTTAATA
          1 TTTAAAAATATTTATATT-TATTATTTTAATA

                 *                *     
        259 TTTAATAAT-TTTATATTTATTTTTTTA
          1 TTTAAAAATATTTATATTTATTATTTTA

        286 TGAAAAAATC


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  30    9  0.36
  31    8  0.32
  32    8  0.32

ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63


Consensus pattern (31 bp):   
TTTAAAAATATTTATATTTATTATTTTAATA
Done.