Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008859.1 Kokia drynarioides strain JFW-HI SEQ_123545, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3098
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35


Found at i:1162 original size:6 final size:6

Alignment explanation


    Indices: 1151--1180  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1141 ATTTAAAATC

                                              
       1151 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
          1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA

       1181 CCTTTGTAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (6 bp):   
AGAAAA

Found at i:1349 original size:14 final size:14

Alignment explanation


    Indices: 1309--1360  Score: 63
    Period size: 15  Copynumber: 3.7  Consensus size: 14

       1299 ATAATGATAT

                          
       1309 TATAAAAATTAAAG
          1 TATAAAAATTAAAG

              *             
       1323 CTGTAAAACATTAAAG
          1 -TATAAAA-ATTAAAG

                          
       1339 TATAAAAATTAAA-
          1 TATAAAAATTAAAG

                      
       1352 T-TAAAAATT
          1 TATAAAAATT

       1361 TGAGCATATT


Statistics
Matches: 34,  Mismatches: 2, Indels: 5
        0.83            0.05        0.12

Matches are distributed among these distances:
  12    8  0.24
  13    1  0.03
  14    6  0.18
  15   12  0.35
  16    7  0.21

ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31


Consensus pattern (14 bp):   
TATAAAAATTAAAG
Done.