Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008865.1 Kokia drynarioides strain JFW-HI SEQ_123551, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3297
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33


Found at i:669 original size:195 final size:195

Alignment explanation


    Indices: 323--768  Score: 553
    Period size: 195  Copynumber: 2.3  Consensus size: 195

        313 AAACCAACGC

                    *                       *   *                            
        323 GATGGTTGGGGTACCGCATATGTTGCGAGTCCCCGATAGCTCGTGTGAGTAGCATCGTGAATCGA
          1 GATGGTTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGTAGCATCGTGAATCGA

                 *                                                           
        388 GAAGATGAGAAATGAATCCAAGAATGGATTACAAACCCTACGATGGCTGAGATTTATGAATAAGT
         66 GAAGAAGAGAAATGAATCCAAGAATGGATTACAAACCCTACGATGGCTGAGATTTATGAATAAGT

             *                                                          *   *
        453 GTATATTCTCGACAACTCGTGTGAGCAGCATCGTTAGGGGACAATTATATACACAGATATTGTAT
        131 GCATATTCTCGACAACTCGTGTGAGCAGCATCGTTAGGGGACAATT-TATACACAGATATCGTAC

             
        518 A
        195 A

                               *      *                                 *    
        519 GATGGTTGAGGTACCGCATTTGTTGCAAGTCCTCGACAGCTCGTGTGAGTAGCATCGTGAGTCGA
          1 GATGGTTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGTAGCATCGTGAATCGA

                      *                         **              *        **  
        584 -AA-AAGAGATATGAAATCCTTAA-AA-GGATTACAGGCCCTACGATGGCTGGGATTTATGCTTG
         66 GAAGAAGAGAAATG-AATCC--AAGAATGGATTACAAACCCTACGATGGCTGAGATTTATGAAT-

                            * *                *         * *      * *        
        645 AA-TGCATATTCTCGATAGCTCGTGTGAGCAGCATTGTTAGGGGATAGTTTATAGATAGATATCG
        127 AAGTGCATATTCTCGACAACTCGTGTGAGCAGCATCGTTAGGGGACAATTTATACACAGATATCG

               *
        709 TACC
        192 TACA

                 *          *                                 *      
        713 GATGGCT-AGGGTACCACATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATC
          1 GATGGTTGA-GGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGTAGCATC

        769 AAGTACTAGT


Statistics
Matches: 216,  Mismatches: 29, Indels: 12
        0.84            0.11        0.05

Matches are distributed among these distances:
 193    1  0.00
 194   71  0.33
 195   79  0.37
 196   63  0.29
 197    2  0.01

ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27


Consensus pattern (195 bp):   
GATGGTTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGTAGCATCGTGAATCGA
GAAGAAGAGAAATGAATCCAAGAATGGATTACAAACCCTACGATGGCTGAGATTTATGAATAAGT
GCATATTCTCGACAACTCGTGTGAGCAGCATCGTTAGGGGACAATTTATACACAGATATCGTACA
Done.