Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008867.1 Kokia drynarioides strain JFW-HI SEQ_123553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2550
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36


Found at i:685 original size:33 final size:33

Alignment explanation


    Indices: 643--710  Score: 136
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        633 AATATGGGCC

                                             
        643 TTAGAGAGATCCAAGATAATTTGACTAAACTCA
          1 TTAGAGAGATCCAAGATAATTTGACTAAACTCA

                                             
        676 TTAGAGAGATCCAAGATAATTTGACTAAACTCA
          1 TTAGAGAGATCCAAGATAATTTGACTAAACTCA

              
        709 TT
          1 TT

        711 TTTAAAGAAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29


Consensus pattern (33 bp):   
TTAGAGAGATCCAAGATAATTTGACTAAACTCA
Done.