Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008884.1 Kokia drynarioides strain JFW-HI SEQ_123571, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5977
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32


Found at i:5135 original size:27 final size:23

Alignment explanation


    Indices: 5087--5147  Score: 59
    Period size: 25  Copynumber: 2.4  Consensus size: 23

       5077 AAAATATGTA

                           *      * 
       5087 TATAAAATATAAAATCATTAAATT
          1 TATAAAA-ATAAAATAATTAAAAT

                                       
       5111 TATTTAAAAATAGAAATAATCTAAAAT
          1 TA--TAAAAATA-AAATAAT-TAAAAT

                      
       5138 TATAAAAATA
          1 TATAAAAATA

       5148 CAAAAAATAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 7
        0.77            0.05        0.17

Matches are distributed among these distances:
  24    2  0.06
  25   11  0.35
  26   11  0.35
  27    7  0.23

ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34


Consensus pattern (23 bp):   
TATAAAAATAAAATAATTAAAAT
Done.