Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008893.1 Kokia drynarioides strain JFW-HI SEQ_123581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3848
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37


Found at i:1183 original size:35 final size:36

Alignment explanation


    Indices: 1137--1206  Score: 133
    Period size: 35  Copynumber: 2.0  Consensus size: 36

       1127 TTGTCGAAGT

                                                
       1137 TTGACAATTTTCAATTTGTGC-TAGCTTAATTGAAC
          1 TTGACAATTTTCAATTTGTGCTTAGCTTAATTGAAC

                                               
       1172 TTGACAATTTTCAATTTGTGCTTAGCTTAATTGAA
          1 TTGACAATTTTCAATTTGTGCTTAGCTTAATTGAA

       1207 TTTATGTATA


Statistics
Matches: 34,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  35   21  0.62
  36   13  0.38

ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44


Consensus pattern (36 bp):   
TTGACAATTTTCAATTTGTGCTTAGCTTAATTGAAC

Done.