genome.fa.s8894.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008894.1 Kokia drynarioides strain JFW-HI SEQ_123582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  239623

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2218--2245	8	3.5	8	100	0	56	89	0	10	0	0.49
4558--4591	17	2.0	17	94	0	59	35	32	5	26	1.81
7873--7918	12	3.8	12	83	16	60	0	28	0	71	0.86
8232--8301	35	2.0	36	88	2	106	30	1	35	32	1.67
16215--16277	30	2.1	30	81	0	72	26	26	22	23	2.00
18440--19024	123	4.9	117	84	7	639	42	7	10	39	1.68
18565--19024	123	3.7	123	89	2	665	43	7	10	38	1.68
30291--30327	10	3.7	10	96	0	65	21	10	8	59	1.56
41961--42000	21	1.9	21	89	0	62	15	20	30	35	1.93
43882--44011	64	2.0	64	87	0	188	51	13	8	26	1.69
45209--45316	38	2.8	38	82	0	135	29	14	18	37	1.91
56232--56371	36	3.9	36	83	0	172	30	22	15	32	1.94
56232--56371	72	1.9	72	88	0	208	30	22	15	32	1.94
57678--57706	12	2.3	13	94	5	51	10	10	0	79	0.94
60998--61037	19	2.0	21	85	9	57	60	22	5	12	1.52
69826--69870	23	2.0	23	82	8	56	55	15	11	17	1.68
72765--73004	52	4.6	52	86	2	266	27	14	24	34	1.94
74841--74874	18	1.9	17	88	5	50	32	14	0	52	1.42
82006--82046	17	2.4	18	80	19	52	19	21	12	46	1.82
87111--87157	21	2.2	21	85	7	60	40	31	4	23	1.74
93983--94082	36	2.8	36	92	0	173	34	16	26	24	1.95
96860--96892	17	1.9	17	88	11	50	30	12	0	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102970--103006	15	2.4	16	82	13	51	62	0	37	0	0.96
104066--104109	22	2.0	22	86	8	63	77	0	20	2	0.88
104080--104117	12	3.2	12	89	10	53	78	0	21	0	0.74
127390--127484	26	3.7	26	87	2	111	29	26	20	24	1.99
127422--127733	25	12.2	25	80	3	232	32	25	16	25	1.96
127422--127782	50	7.1	50	75	5	267	32	25	16	24	1.96
127517--127605	27	3.4	27	85	3	119	35	26	12	24	1.91
127457--127800	77	4.5	77	78	5	322	33	24	16	24	1.96
127457--127791	152	2.2	154	83	3	408	33	25	16	25	1.96
143613--143674	15	4.1	15	77	8	63	22	27	24	25	2.00
143613--143674	30	2.1	30	84	0	79	22	27	24	25	2.00
147145--147254	54	2.0	54	91	3	177	36	14	25	23	1.93
149305--150202	45	19.8	46	82	3	953	32	27	15	24	1.95
149305--150184	272	3.2	273	82	4	996	32	27	14	25	1.95
151074--151157	26	3.3	25	73	23	68	23	1	4	70	1.14
151195--151245	4	13.2	4	79	8	52	21	0	3	74	0.98
151173--151226	12	4.5	12	79	6	56	16	0	5	77	0.94
151173--151245	35	2.1	36	85	12	98	20	0	5	73	1.02
151483--151529	21	2.2	22	92	3	78	19	0	6	74	1.03
151733--151782	23	2.0	23	82	17	57	26	6	4	64	1.35
161840--161882	12	3.6	12	81	9	52	67	4	27	0	1.10
162274--162323	17	3.0	17	77	8	50	18	10	10	62	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171324--171754	141	3.0	142	83	6	591	40	3	10	45	1.55
171440--171506	22	3.2	20	75	12	62	37	0	11	50	1.39
171658--171704	20	2.3	21	85	3	60	44	2	6	46	1.40
172308--172360	21	2.5	21	82	11	63	22	7	0	69	1.13
172445--172486	3	14.0	3	100	0	84	33	0	0	66	0.92
176403--176456	21	2.6	21	96	0	99	31	18	7	42	1.78
186763--186810	24	2.0	24	87	0	69	52	2	6	39	1.39
186765--186817	24	2.2	24	82	0	61	54	3	3	37	1.36
194540--194583	22	2.0	22	100	0	88	22	18	4	54	1.61
195070--195125	29	1.9	29	85	0	76	51	1	0	46	1.11
198297--198334	13	2.8	14	88	4	51	68	2	10	18	1.30
201814--201887	31	2.4	31	86	4	96	32	14	16	36	1.89
205505--205592	35	2.5	35	84	0	113	19	17	29	34	1.94
210810--210848	16	2.5	15	84	8	51	76	2	2	17	1.01
210810--210881	26	2.7	26	76	20	76	75	5	1	18	1.07
211057--211108	4	12.2	4	82	15	52	78	0	0	21	0.74
211056--211108	13	4.1	13	83	16	74	79	0	0	20	0.74
211056--211106	5	10.6	5	87	12	56	80	0	0	19	0.71
213118--213224	50	2.1	50	89	0	160	24	16	19	39	1.92
218833--219001	81	2.1	81	95	1	302	27	23	14	33	1.94
228033--228092	26	2.4	24	86	10	84	35	1	1	61	1.16
232398--232440	19	2.3	19	95	0	77	34	13	9	41	1.77

Tables:   1

The End!