Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000089.1 Kokia drynarioides strain JFW-HI SEQ_110715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.34


Found at i:820 original size:19 final size:19

Alignment explanation


    Indices: 798--834  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        788 CTTTCTCTTT

                   *           
        798 CTTTTTCTCTATCCCCTTC
          1 CTTTTTCCCTATCCCCTTC

                      *       
        817 CTTTTTCCCTTTCCCCTT
          1 CTTTTTCCCTATCCCCTT

        835 GTCCCCCACA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.03, C:0.43, G:0.00, T:0.54


Consensus pattern (19 bp):   
CTTTTTCCCTATCCCCTTC
Done.