Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008904.1 Kokia drynarioides strain JFW-HI SEQ_123593, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9193
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31


Found at i:403 original size:37 final size:38

Alignment explanation


    Indices: 334--407  Score: 105
    Period size: 37  Copynumber: 2.0  Consensus size: 38

        324 ATCAATTCAG

                          *            *          
        334 TGGTTGTCAATCGATGGTACAACAAAGTTGAAATTGAA
          1 TGGTTGTCAATCGAGGGTACAACAAAGCTGAAATTGAA

                         *     *                 
        372 TGGTTGTCAAT-GGGGGTATAACAAAGCTGAAATTGA
          1 TGGTTGTCAATCGAGGGTACAACAAAGCTGAAATTGA

        408 CTTCCTTGTT


Statistics
Matches: 32,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  37   21  0.66
  38   11  0.34

ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28


Consensus pattern (38 bp):   
TGGTTGTCAATCGAGGGTACAACAAAGCTGAAATTGAA
Done.