Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008905.1 Kokia drynarioides strain JFW-HI SEQ_123594, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4456
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36


Found at i:3973 original size:37 final size:38

Alignment explanation


    Indices: 3922--3995  Score: 105
    Period size: 37  Copynumber: 2.0  Consensus size: 38

       3912 AACAAGGAAG

                     *                            
       3922 TCAATTTCAGCTTTGTTATACC-CCCATTGACAACCAT
          1 TCAATTTCAACTTTGTTATACCACCCATTGACAACCAT

                             *     * *           
       3959 TCAATTTCAACTTTGTTGTACCATCGATTGACAACCA
          1 TCAATTTCAACTTTGTTATACCACCCATTGACAACCA

       3996 CTGAATTGAT


Statistics
Matches: 32,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  37   20  0.62
  38   12  0.38

ACGTcount: A:0.28, C:0.27, G:0.09, T:0.35


Consensus pattern (38 bp):   
TCAATTTCAACTTTGTTATACCACCCATTGACAACCAT
Done.