Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008911.1 Kokia drynarioides strain JFW-HI SEQ_123600, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7025
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32


Found at i:560 original size:52 final size:52

Alignment explanation


    Indices: 428--663  Score: 307
    Period size: 52  Copynumber: 4.6  Consensus size: 52

        418 TTTTCATTTA

                                             *            *    *
        428 ATACTCACGATG--ACATAGTCATCGGACCTCACAATCCGTAAAGGGTTCAG
          1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT

                                 *   *             *            
        478 AT-CTCACGATGACACATAGTAATCAGACCTCATAATCCATAAAGGATTCAT
          1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT

                   *           *                  *      *      
        529 ATACTCATGATGACACATAATCATCGGACCTCATAATCTGTAAAGTATTCAT
          1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT

                   *        *         *       **                
        581 ATACTCATGATGACACGTAGTCATCGAACCTCATGCTCCGTAAAGGATTCAT
          1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT

                            *              
        633 ATACTCACGATGACACGTAGTCATCGGACCT
          1 ATACTCACGATGACACATAGTCATCGGACCT

        664 TTTACATTTA


Statistics
Matches: 161,  Mismatches: 22, Indels: 4
        0.86            0.12        0.02

Matches are distributed among these distances:
  49    9  0.06
  50    2  0.01
  51   34  0.21
  52  116  0.72

ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26


Consensus pattern (52 bp):   
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT

Done.