Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008916.1 Kokia drynarioides strain JFW-HI SEQ_123605, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7187
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34


Found at i:147 original size:21 final size:21

Alignment explanation


    Indices: 66--159  Score: 91
    Period size: 21  Copynumber: 4.5  Consensus size: 21

         56 GTTTTTAGTA

                          *       
         66 TCGGTAGAAGCA-TGACTTGTT
          1 TCGGTAGAAG-AGTCACTTGTT

                          **     
         87 TCGGTAGAAGAGTCTTTTGTT
          1 TCGGTAGAAGAGTCACTTGTT

                          *      
        108 TCGGTAGAAGAGTCTCTTGTT
          1 TCGGTAGAAGAGTCACTTGTT

                  *  **         *
        129 TCGGTAAAACTGTCACTTGTA
          1 TCGGTAGAAGAGTCACTTGTT

               *      
        150 TCGATAGAAG
          1 TCGGTAGAAG

        160 TCTTACTGTT


Statistics
Matches: 60,  Mismatches: 12, Indels: 2
        0.81            0.16        0.03

Matches are distributed among these distances:
  20    1  0.02
  21   59  0.98

ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35


Consensus pattern (21 bp):   
TCGGTAGAAGAGTCACTTGTT
Done.