Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000892.1 Kokia drynarioides strain JFW-HI SEQ_112015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1887
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40


Found at i:678 original size:15 final size:16

Alignment explanation


    Indices: 658--691  Score: 52
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        648 CATACGTTTG

                            
        658 TTTACTGAG-AATTTT
          1 TTTACTGAGTAATTTT

                             
        673 TTTACTGAGTTAATTTT
          1 TTTACTGAG-TAATTTT

              
        690 TT
          1 TT

        692 GAAGATAATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    9  0.53
  17    8  0.47

ACGTcount: A:0.24, C:0.06, G:0.12, T:0.59


Consensus pattern (16 bp):   
TTTACTGAGTAATTTT

Done.