Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008923.1 Kokia drynarioides strain JFW-HI SEQ_123614, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3041
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31


Found at i:1310 original size:23 final size:23

Alignment explanation


    Indices: 1280--1327  Score: 78
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       1270 TAAATTATGT

                                   
       1280 TTTAATCATCAAACTTTTAAAAA
          1 TTTAATCATCAAACTTTTAAAAA

                     *   *         
       1303 TTTAATCATTAAATTTTTAAAAA
          1 TTTAATCATCAAACTTTTAAAAA

              
       1326 TT
          1 TT

       1328 GACCTAAAAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46


Consensus pattern (23 bp):   
TTTAATCATCAAACTTTTAAAAA
Done.