Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000893.1 Kokia drynarioides strain JFW-HI SEQ_112019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1750
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:902 original size:46 final size:46

Alignment explanation


    Indices: 465--1056  Score: 579
    Period size: 45  Copynumber: 12.9  Consensus size: 46

        455 GCTTTCTGTA

                    * *             * *     *               *
        465 GCTTCAATTTACCCCTCTAGATATAATGGGTATAAGATTGGATGTGTTA
          1 GCTTCAATCTGCCCCTCTAGAT-TTAGGGGTAAAAGATTGGATG-G-TG

                       *                   *               *
        514 GCTTCAATCTGTCCCTCTAGATTTAGGGGTATAAGATTGGATGTGGTA
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGA--TGGTG

                         *  * *      *                 *  
        562 GCTTCAATCTGCCTCTATGGATTTAAGGGTAAAAGATTGGATGATG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG

                *     *              *   *                
        608 GCTTTAATCTACCCCTCTAGA-TTAAGGGCAAAAGATTGGATGGTG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG

            *                 *      *                   *
        653 ACTTCAATCTGCCCCTCTGGA-TTAAGGGTAAAAGATTGGATGGTA
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG

                                      *                   
        698 GCTTCAATCTGCCCCTCTAGA-TTAGAGGTAAAAGATTGGATGGTG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG

                    *            **                  *  * 
        743 GCTTCAATTTGCCCCTCT-GAAGTAGGGGTAAAAGATTGGACGGAG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG

                    * *   * * *         *      *          
        788 GCTTCAATTTTCCCTTTTGGATTTAGGGATAAAAGGTTGGATGGTG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG

                **    *  *                          *      
        834 GCTTTGATCTACCTCT-TCAGATTTAGGGGTAAAAGATTGAATGGTG
          1 GCTTCAATCTGCCCCTCT-AGATTTAGGGGTAAAAGATTGGATGGTG

                    *                                 *   
        880 GCTTCAATTTGCCCCTCTAGA-TTAGGGGTAAAAGATTGGATAGTG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG

            *         **  *             *                  
        925 ACTTCAATCTATCCTTCT-GTATTTAGGAGTAAAAGATTGGATGGTG
          1 GCTTCAATCTGCCCCTCTAG-ATTTAGGGGTAAAAGATTGGATGGTG

             *  *             *                    *       
        971 GTTTAAATCTGCCCCTCTGGATTTAGGGAGTAAAAGATTAGATGGTG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGG-GTAAAAGATTGGATGGTG

             *           *                          
       1018 GTTTCAATCTGCCTCTCTAGA-TTAGGGGTAAAAGATTGG
          1 GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGG

       1057 GTGTTACAGC


Statistics
Matches: 452,  Mismatches: 81, Indels: 24
        0.81            0.15        0.04

Matches are distributed among these distances:
  44    3  0.01
  45  201  0.44
  46  135  0.30
  47   37  0.08
  48   54  0.12
  49   20  0.04
  50    2  0.00

ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33


Consensus pattern (46 bp):   
GCTTCAATCTGCCCCTCTAGATTTAGGGGTAAAAGATTGGATGGTG
Done.