Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008936.1 Kokia drynarioides strain JFW-HI SEQ_123628, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11499
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35


Found at i:5588 original size:18 final size:19

Alignment explanation


    Indices: 5556--5592  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

       5546 ACTAAAATCA

                      *        
       5556 TATTTAATTTTTTTGTTAC
          1 TATTTAATTTATTTGTTAC

                               
       5575 TATTT-ATTTATTTGTTAC
          1 TATTTAATTTATTTGTTAC

       5593 GTAAAAATTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18   12  0.71
  19    5  0.29

ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68


Consensus pattern (19 bp):   
TATTTAATTTATTTGTTAC
Done.