Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008940.1 Kokia drynarioides strain JFW-HI SEQ_123632, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1216
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:857 original size:21 final size:21

Alignment explanation


    Indices: 833--889  Score: 60
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        823 AGTGCAGACC

                               * 
        833 TCTACCGATACAAGTGACAGT
          1 TCTACCGATACAAGTGACACT

                *      *      *  
        854 TCTATCGATACGAGTGACTCT
          1 TCTACCGATACAAGTGACACT

                  * *      
        875 TCTACCTAAACAAGT
          1 TCTACCGATACAAGT

        890 CTTATTTCTA


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28


Consensus pattern (21 bp):   
TCTACCGATACAAGTGACACT
Done.