Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008942.1 Kokia drynarioides strain JFW-HI SEQ_123636, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2788
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.33


Found at i:955 original size:24 final size:24

Alignment explanation


    Indices: 892--1082  Score: 125
    Period size: 24  Copynumber: 8.0  Consensus size: 24

        882 GTATATGTGC

                   *    *       ** *
        892 AAGCTGATGAGCATAAACGTGCAA
          1 AAGCTGACGAGCGTAAACGTATAT

                   *   *         *  
        916 AAGCTGATGAGTGTAAACGTACAT
          1 AAGCTGACGAGCGTAAACGTATAT

                             *      
        940 AAGCTGACGAGCGT-AATGTATAT
          1 AAGCTGACGAGCGTAAACGTATAT

               *    *   *  *    * **
        963 AAGTTGACTAGCATAGACGTGTGC
          1 AAGCTGACGAGCGTAAACGTATAT

                   *          *     
        987 AAGCTGATGAGCGTAAACATATAT
          1 AAGCTGACGAGCGTAAACGTATAT

                 *               * **
       1011 AAGCTAACGAGCGTAAAAC-TGTGC
          1 AAGCTGACGAGCGT-AAACGTATAT

               *    *        *      
       1035 AAGATGACAAGCGTAAATGTATAT
          1 AAGCTGACGAGCGTAAACGTATAT

                        *           
       1059 AAGCTGACGAGCATAAACGTATAT
          1 AAGCTGACGAGCGTAAACGTATAT

       1083 GTGTTGTTTT


Statistics
Matches: 123,  Mismatches: 41, Indels: 6
        0.72            0.24        0.04

Matches are distributed among these distances:
  23   21  0.17
  24   98  0.80
  25    4  0.03

ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23


Consensus pattern (24 bp):   
AAGCTGACGAGCGTAAACGTATAT

Done.