Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008948.1 Kokia drynarioides strain JFW-HI SEQ_123644, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18479
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33


Found at i:7730 original size:20 final size:21

Alignment explanation


    Indices: 7705--7744  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       7695 TGATTAGAAG

                     *           
       7705 AAGAG-AAATGAAAAAGAAAA
          1 AAGAGAAAAAGAAAAAGAAAA

                                
       7725 AAGAGAAAAAGAAAAAGAAA
          1 AAGAGAAAAAGAAAAAGAAA

       7745 GCATATGTAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.78, C:0.00, G:0.20, T:0.03


Consensus pattern (21 bp):   
AAGAGAAAAAGAAAAAGAAAA

Found at i:9243 original size:12 final size:12

Alignment explanation


    Indices: 9226--9250  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       9216 TTGTTATATG

                        
       9226 ATGAATGCTATT
          1 ATGAATGCTATT

                        
       9238 ATGAATGCTATT
          1 ATGAATGCTATT

             
       9250 A
          1 A

       9251 ATTCTTTAAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40


Consensus pattern (12 bp):   
ATGAATGCTATT

Found at i:15304 original size:31 final size:31

Alignment explanation


    Indices: 15266--15331  Score: 105
    Period size: 31  Copynumber: 2.1  Consensus size: 31

      15256 AGGACAAAAT

                           *               
      15266 ATTTCAATCTGATTTTATTCCAATCAAATTG
          1 ATTTCAATCTGATTTGATTCCAATCAAATTG

                    *           *          
      15297 ATTTCAATTTGATTTGATTCTAATCAAATTG
          1 ATTTCAATCTGATTTGATTCCAATCAAATTG

                
      15328 ATTT
          1 ATTT

      15332 AAAGGTTCTT


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48


Consensus pattern (31 bp):   
ATTTCAATCTGATTTGATTCCAATCAAATTG
Done.